Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01989 ATGGGAAAACACTCTAATTCTTCTTCCTCTTCCATCAGCAGTAGCAGCAACCACCACCACCTTCTCATTTCCACTGCATCCTCTCTCACACAAGAGCTTCCCACTGATCTTAGCCTTGGACTCAGCATTTCCGCTGCTCACCATGGTGGTTCTTCTATTTCAAGGGGGCATTGGCAACAACCACAGCACCCTCTTGTGAACATTTCGCAAGTGGCTGAAGCAAATGATTGCAACGACCATAGCAGCTTCTTTGTGAAGGTCTACATGGAAGGCATTCCAATAGGAAGGAAACTCAATATACTTGCTCATGGCAGCTATTATGAGTTAGTGAAGAGTCTTGAACACATGTTCGACACTACCATTCTTTGGGGGACAGAGATGAATGGAGTGCAACCCGAGAGATGCCATGTACTAACATACGAAGATGAAGAAGGAGATTTGGTCATGGATGTTCTTATCCACAGTAAAGAGATTGAAGATCACAAGGGTAGACACATTCGGGTGTTAAGTGTGCAGACACTGGCGGAGATTTCCAATTTTGTCCTCTAG 549 0.4536 MGKHSNSSSSSISSSSNHHHLLISTASSLTQELPTDLSLGLSISAAHHGGSSISRGHWQQPQHPLVNISQVAEANDCNDHSSFFVKVYMEGIPIGRKLNILAHGSYYELVKSLEHMFDTTILWGTEMNGVQPERCHVLTYEDEEGDLVMDVLIHSKEIEDHKGRHIRVLSVQTLAEISNFVL 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01989 182 Gene3D - 76 176 - -
Vimu6g01989 182 ProSiteProfiles PB1 domain profile. 82 173 IPR000270 GO:0005515
Vimu6g01989 182 Pfam AUX/IAA family 73 148 IPR033389 -
Vimu6g01989 182 SUPERFAMILY CAD & PB1 domains 77 149 - -
Vimu6g01989 182 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 74 149 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01989 Vimu-Chr6 17856017 17856922 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vimu6g01989 AUX_IAA 1.4e-13 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01989 K14484 - gmx:100783140 229.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01989 6 17856017 17856922 Vimu3g01928 3 34255099 34255910 PCT