Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01988 ATGCCTGACTCCACTCGCTCGGCTATGACAAGAACCTCCTACTCCATTTACGACAATGATTTCCTTGAGCTGGTGTGGGAAAATGGTGAGGTTGTTGCACGAGGAGGTTCATCAAATAAATCACCCAGCATAAAAAGAGCAAGGTTGAACCCTTTACACTCACTTGAAGATCACCTTTCCCCTCTAAAGGAATCTGACATGAGCTCTTCCTATCAAAGCAATGCCCAAGATTCCTGTCATTCCAGCCAAAACAAGAATTCCTGCAAGCTTAACGAGGAATTTGAAAACTTATTAAGACCAGCAAAGGACTCTAGGCCCGTTACCCCAGGACATGGTCTCTTACAACAGTGCTCATCTTCATCTCCTCTCAAGAAACAAAGAACTCATTCAACTCACACACCACCAACACCGCCAACACGGAACATGGGGTTTGATCAAACAACAGCTAAAGGGAACTTCTCCAATTTTTCGATACCTGCAGTCTTTCTCAAATCCAGTACTTGTCACGGAAGCAGTACAACTCAGCAGACAAAAAATTATTCATATCCAGCGAGAGTGGAGGAGATTGAAGCGCGTAAGGTTGAGAAATCAACTAAGGAATCACAAGGGTTTCAAAAGCAAACATCCTTAACCGTTGAAAGAAGTGAAAAACCACCCCCACCCCTTGATGAGCACTCTGAAGCTACTGGTCTTGGAATCCACAGACACCAAGGTCAACTGCGTTATGACCAAACCTCAGGCTCTGAAGCACTTAGAGCCAAGGAAAATACTTATTGTAAAGAACCGTTCCTAGCTTCTTCTGTGTGCTCTCTTGGAGCTTCAAACGACCCAAACGTTGGTATCAGGAAAAATGAGGACACCGACGACTCAAATTATTTAAGTGATCCCTTCGTGTTCGTTACCATCACTCTCATGGAACATGGGTCAATTTGTTTGATGCAGAATGACGAAGAGCCTGAAAATATGGTAAAGCAAGATAGGGAGGGAAACAGACTCAAGAGAACCAGAAACGCTGAGGTTCATAACTTATCTGAAAAGAAGCGTAGAGAAAAAATCAACAAGAAGATGCGTACATTGAAAGACCTCATACCAAATTGCAATAAGGTGGACAAAGCATCAATGCTTGACGATGCCATCGAGTATCTGAAGACTCTAAAGCTTCAGTTACAGGAATTTGAAGGAAAGTCTAAAGCTTGGTGCTATGTATGTGAAATGATGCAGATAATGTCAATGGGAAGTGGATTATGGCCACTTATGATGCTACCTGCTGCGGCAGCGCCTCACATGAATGGACCACATTTATCACAGTTGGTGGGAGCTGGAATGGGATTCAGGCCACCAGAGCTTCCTGTTCCACCACTATCTGCTATCACAGACACCAGACTTCATCAGATGTTTGGTTTCCCCAACCAAATACCAACCATGCCAATGCCTCACGCTCCTTTCTTCCCCATCATCGGAAATTCTCCCACACAACCACACTTGGCCGCCGCCACCGCACCTGCACAACATCTTGCTAAATCTGCTGCATCTCTTCAGGTCTCACTCCCCACCAACTTGGACCCTCTGGAAAATGCAACAAATCAACTGCAGAATCCAGTGTCCTTTCATCCCCACGGCATCAGTACTCCTTTCATTTTTCCACAAAAGTAG 1653 0.4477 MPDSTRSAMTRTSYSIYDNDFLELVWENGEVVARGGSSNKSPSIKRARLNPLHSLEDHLSPLKESDMSSSYQSNAQDSCHSSQNKNSCKLNEEFENLLRPAKDSRPVTPGHGLLQQCSSSSPLKKQRTHSTHTPPTPPTRNMGFDQTTAKGNFSNFSIPAVFLKSSTCHGSSTTQQTKNYSYPARVEEIEARKVEKSTKESQGFQKQTSLTVERSEKPPPPLDEHSEATGLGIHRHQGQLRYDQTSGSEALRAKENTYCKEPFLASSVCSLGASNDPNVGIRKNEDTDDSNYLSDPFVFVTITLMEHGSICLMQNDEEPENMVKQDREGNRLKRTRNAEVHNLSEKKRREKINKKMRTLKDLIPNCNKVDKASMLDDAIEYLKTLKLQLQEFEGKSKAWCYVCEMMQIMSMGSGLWPLMMLPAAAAPHMNGPHLSQLVGAGMGFRPPELPVPPLSAITDTRLHQMFGFPNQIPTMPMPHAPFFPIIGNSPTQPHLAAATAPAQHLAKSAASLQVSLPTNLDPLENATNQLQNPVSFHPHGISTPFIFPQK 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01988 550 Coils Coil 375 395 - -
Vimu6g01988 550 Pfam Helix-loop-helix DNA-binding domain 340 385 IPR011598 GO:0046983
Vimu6g01988 550 FunFam Basic helix-loop-helix transcription factor 331 393 - -
Vimu6g01988 550 Gene3D - 332 397 IPR036638 GO:0046983
Vimu6g01988 550 MobiDBLite consensus disorder prediction 111 150 - -
Vimu6g01988 550 MobiDBLite consensus disorder prediction 63 85 - -
Vimu6g01988 550 MobiDBLite consensus disorder prediction 192 228 - -
Vimu6g01988 550 CDD bHLH_AtPIF_like 336 415 IPR047265 -
Vimu6g01988 550 PANTHER TRANSCRIPTION FACTOR PIF3 60 513 IPR044273 GO:0003700|GO:0006355
Vimu6g01988 550 SMART finulus 342 391 IPR011598 GO:0046983
Vimu6g01988 550 MobiDBLite consensus disorder prediction 64 85 - -
Vimu6g01988 550 MobiDBLite consensus disorder prediction 101 150 - -
Vimu6g01988 550 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 335 395 IPR036638 GO:0046983
Vimu6g01988 550 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 336 385 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01988 Vimu-Chr6 17836240 17838516 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01988 327 422 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 56.122 3.06e-25 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu6g01988 HLH 4.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01988 K12126 - gmx:100784724 551.977