Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01985 ATGTGGGCCGCAGATTCGACACTGCCACTTCATTTTCCTGTCTTCAATTCACATAATCTCTCTCGCTCTCATATTCTCCCTATCACAGTCTGGCTCAGTGCCAATCCTGCTGACATTTCACCTACACCTACACACAAGTTCAATCCAAGAACCCATCAGTTAATTGGAAAGGTTCACCCCTTTGGTGGGGTGAGAAGCTACCAAAAACTACAAATGGGAAGGCATTCCTGCTGTTACAAACAGAAACTTAGGAAGGGTCTGTGGTCACCAGAGGAGGATGAAAAACTTCTGAGGCATATCACTAAGCATGGTCATGGTTGTTGGAGCTCCGTTCCTAAGCAAGCAGGTTTGCATAGGTGCGGCAAGAGCTGCAGGCTTCGCTGGATCAATTATCTTAGGCCTGATTTGAAGAGAGGTACATTTTCACAAGAGGAGGAAAATCTTATCATTGAACTTCATGCAGTGTTAGGGAACAGATGGTCTCAAATAGCAGCACAATTGCCTGGGAGGACTGACAATGAAATAAAGAATCTGTGGAATTCTTGCCTAAAGAAGAAACTGAGGCAAAGAGGTATAAACCCTGTGACACATAAGCCACTGTCAGAGGTTGAGAATGGTGAGGAGGAGAAAACAAGGAGCCAAGAATTATCTAATGAATTGAACCTCTTGAATTCTGAGAGCTTCAAGTCAGATGAAGGGTCCTATGAGCAGAGAGCATCTTCGATTGCCCCCAAAGCCTATGAGATGGAAGGTTCCTGCAGCTCCAAGATTAACACCAAAAATGACACCAACTTGATAGCCAATTGTTCCAACAAAGACTTGTTCCTAGACAGCTACACAACTAGTTGTCAACCCTCAGATTTGATGGGAAATTACCCTCTTCAGATGACCGACACTCTCCCAACCAATTCAGACTCCAGCCATTGGTTCAGTCCAACTGCAAGACCCATTGATATAAACTCTGAGTTTACTTCCAATGTTATGTCCATTCTTCCACCTACAACAACCTCATTTCTCCCTAGCACTTCTTTTTGCTACAAGCCATCACTTGCCGTCCCTCCAGAAGATATTTCAGCACCTTCTTTTGCTTTGAATGGACCCAATTACTGGGAACCCAGTGCCTCCAACAACAGCAATGGCAGCAACACAAGTGATGGCAGCAGAGAGTTTACAAGTAGCAAGAACAGTCTTCTTTCTTCGTGGGGACTGACAGAAGAAGCCAAGTGGTCTGAGTACCTCCACAACCCAATGCTGATGCTGGCAGCTCCTGAATCATTGTGCAACCAAATTAGGCCAGCCACACATTTGGTACCTGATAACACTTTAGGGACCATAATTTCTGGTTCCAAGGAGCAAAACCAGTCACAAACTTCTGCCATCTTTTCCAAGGACATCCAAAAGCTAACAGCAGCGTTTGGACATATATAA 1428 0.4468 MWAADSTLPLHFPVFNSHNLSRSHILPITVWLSANPADISPTPTHKFNPRTHQLIGKVHPFGGVRSYQKLQMGRHSCCYKQKLRKGLWSPEEDEKLLRHITKHGHGCWSSVPKQAGLHRCGKSCRLRWINYLRPDLKRGTFSQEEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGINPVTHKPLSEVENGEEEKTRSQELSNELNLLNSESFKSDEGSYEQRASSIAPKAYEMEGSCSSKINTKNDTNLIANCSNKDLFLDSYTTSCQPSDLMGNYPLQMTDTLPTNSDSSHWFSPTARPIDINSEFTSNVMSILPPTTTSFLPSTSFCYKPSLAVPPEDISAPSFALNGPNYWEPSASNNSNGSNTSDGSREFTSSKNSLLSSWGLTEEAKWSEYLHNPMLMLAAPESLCNQIRPATHLVPDNTLGTIISGSKEQNQSQTSAIFSKDIQKLTAAFGHI 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01985 475 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 137 187 IPR017930 -
Vimu6g01985 475 Pfam Myb-like DNA-binding domain 85 132 IPR001005 -
Vimu6g01985 475 Pfam Myb-like DNA-binding domain 138 182 IPR001005 -
Vimu6g01985 475 Coils Coil 206 226 - -
Vimu6g01985 475 Gene3D - 82 138 - -
Vimu6g01985 475 Gene3D - 139 216 - -
Vimu6g01985 475 CDD SANT 88 132 IPR001005 -
Vimu6g01985 475 MobiDBLite consensus disorder prediction 201 215 - -
Vimu6g01985 475 SMART sant 84 134 IPR001005 -
Vimu6g01985 475 SMART sant 137 185 IPR001005 -
Vimu6g01985 475 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 80 136 IPR017930 -
Vimu6g01985 475 SUPERFAMILY Homeodomain-like 83 179 IPR009057 -
Vimu6g01985 475 MobiDBLite consensus disorder prediction 193 220 - -
Vimu6g01985 475 FunFam MYB transcription factor 139 211 - -
Vimu6g01985 475 FunFam Myb transcription factor 82 138 - -
Vimu6g01985 475 ProSiteProfiles Myb-like domain profile. 80 132 IPR001005 -
Vimu6g01985 475 ProSiteProfiles Myb-like domain profile. 133 183 IPR001005 -
Vimu6g01985 475 CDD SANT 140 180 IPR001005 -
Vimu6g01985 475 PANTHER MYB DOMAIN PROTEIN 55 72 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01985 Vimu-Chr6 17813542 17816955 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01985 72 227 MYB Transcription Factor Family AT4G01680 82.692 8.34e-93 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu6g01985 Myb_DNA-binding 1.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01985 K09422 - gmx:100819449 712.22