Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01983 ATGGCTGCGAAGCCTCTCATGGTCCCTCTCACTCTTATTCCGGGAGCTGCTTCCAAAGGAGCTGTTTGTTTAGATGGAACGTTGCCTGGTTATCACTTTCATCCTGGATTTGGATCTGGGGCAAATAGTTGGCTCATTCAATTGGAGGGTGGAGGATGGTGTAATACCATCAGAAGTTGTGTCTTCAGAAAAACTACTCGTCGTGGTTCCTCAAAATTCATGGAAAAGCAACTAGCATTCACAGGGATATTAAGCAACAAAGCTGAAGAAAACCCTGATTTCTTTAACTGGAACAGAGTTAAAGTACGGTACTGTGATGGGGCATCTTTCAGTGGAGATAGTCAAGACGAGGCTGCACAGCTTCAATTCCGAGGACAAAAAATCTGGCAAGCTGCAATGGAGGAATTATTGTCAAAGGGGATGAAGAAAGCCAACCAGGCTCTTTTGTCTGGATGCTCTGCTGGTGGTCTAGCGTCTATAATACATTGTGATGAGTTCCGGACCTTATTTCCTACATCTACCAAAGTGAAATGTTTGAGCGATGCAGGGTTTTTCCTAGATGCGGTTGATGTTGCTGGGGTTCGCACAATGAGGAATCTGTTTGGAGGTGTAGTTAAGTTACAGGAAGTGCAAAAAAATCTTCCAGAAAGTTGTCTCAACCAATTGGACCCAACTTCGTGCTTTTTTCCCCAAAATTTGATCAACCATGTTCAGACTCCATTGTTTCTACTCAATGCAGCTTATGATTCATGGCAGGTCCAAGACAGTTTGGTCTCTGGTTCAGCAGATCCCCATGGCTCTTGGAATGATTGTAAACGTAATCGTGCACTCTGTAACTCATCTCAAATTCAATTCTTCCAAGATTTCAGAAATCAAATGCTAAACTACATCAAAGGCTTCTCAGGGGAATCTCGTACTGGGTTATTCATCAATTCTTGTTTTGCTCATTGCCACTCCGAATTACAAGATACTTGGTTTGCTGATGACTCTCCAGTTATTGGCAATACGCCAGTTGCAACTGCTGTTGGACAATGGTATTTTGATCGGAAAACTGTCAAAGCTATAGACTGTCCTTATCCCTGTGACAAAACCTGCCATAATTCGGTCTTCAAGTGA 1116 0.4301 MAAKPLMVPLTLIPGAASKGAVCLDGTLPGYHFHPGFGSGANSWLIQLEGGGWCNTIRSCVFRKTTRRGSSKFMEKQLAFTGILSNKAEENPDFFNWNRVKVRYCDGASFSGDSQDEAAQLQFRGQKIWQAAMEELLSKGMKKANQALLSGCSAGGLASIIHCDEFRTLFPTSTKVKCLSDAGFFLDAVDVAGVRTMRNLFGGVVKLQEVQKNLPESCLNQLDPTSCFFPQNLINHVQTPLFLLNAAYDSWQVQDSLVSGSADPHGSWNDCKRNRALCNSSQIQFFQDFRNQMLNYIKGFSGESRTGLFINSCFAHCHSELQDTWFADDSPVIGNTPVATAVGQWYFDRKTVKAIDCPYPCDKTCHNSVFK 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01983 371 PANTHER NOTUM-RELATED 7 367 IPR004963 GO:0016787
Vimu6g01983 371 Pfam Pectinacetylesterase 3 351 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01983 Vimu-Chr6 17786369 17790399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01983 1 370 Carbohydrate Esterase AT3G62060 72.237 0.0 577
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01983 K19882 - gmx:100785270 692.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01983 6 17786369 17790399 Vimu3g01936 3 34337119 34349455 PCT