Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01981 ATGGCGTCTTCATTATCAGCTCAATTTGTTCATTGTCAGAACTCACTTCCACTGGCTCAGGGTAATTTGAGCCGAGATGTGTCAAAGGTTCAAAGGCCAGGTGTTGTCTGTTGCGTTACAGGGTCACGGCTTGGTCACGGTAAAACATTGGCATCTAGGTCACACTATGCCTTGAGGTTCCCTGTGAGGCAACAATCTGAAGCAAGGTCAATTAGATACAGGAGCATGACATGTGTCAACGCCACAGACAATGCTCTAGAGCTTCAAGCCAAGGTGACAACCAAGTGTTTCTTTGACGTAGAAGTTGGGGGTAAGGCTATTGGCAGAATTGTTTTGGGCCTATTTGGAGATGATGTTCCCAAAACAGCTGAAAATTTCCGTGCTTTGTGCACAGGCAAGCAATCAAGTGAGAAAGGATATGGTTACAAAGGAAGCTCCTTCCATCGTATAATCAAAGATTTCATGATTCAAGGAGGAGACTTTACGGAAGGAAATGGAACTGGTGGAATTAGTATCTATGGTCCAAGTTTTAAAGATGAGAGTTTTGCCTTGAAGCATACTGGTCCTGGAGTTCTAAGCATGGCAAATGCTGGTCCGAATACCAATGGTAGTCAATTTTTCATTTGCACTGTAAAGACTCCATGGCTAGACAATCGTCACGTTGTTTTTGGACATGTCATTGATGGCTTGGATGTTGTGAGGACACTTGAATCCCAGGAGACGAGTAGGTTAGATGCCCCTCGGAAGCCTTGCAGAATTGTTAATTGCGGAGAACTGCCTATAGATGGTTGA 792 0.4432 MASSLSAQFVHCQNSLPLAQGNLSRDVSKVQRPGVVCCVTGSRLGHGKTLASRSHYALRFPVRQQSEARSIRYRSMTCVNATDNALELQAKVTTKCFFDVEVGGKAIGRIVLGLFGDDVPKTAENFRALCTGKQSSEKGYGYKGSSFHRIIKDFMIQGGDFTEGNGTGGISIYGPSFKDESFALKHTGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGLDVVRTLESQETSRLDAPRKPCRIVNCGELPIDG 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01981 263 Gene3D - 82 262 IPR029000 -
Vimu6g01981 263 CDD cyclophilin_ABH_like 95 257 - -
Vimu6g01981 263 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 205 217 IPR002130 GO:0000413|GO:0003755
Vimu6g01981 263 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 218 233 IPR002130 GO:0000413|GO:0003755
Vimu6g01981 263 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 190 205 IPR002130 GO:0000413|GO:0003755
Vimu6g01981 263 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 147 159 IPR002130 GO:0000413|GO:0003755
Vimu6g01981 263 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 114 129 IPR002130 GO:0000413|GO:0003755
Vimu6g01981 263 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 98 257 IPR002130 GO:0000413|GO:0003755
Vimu6g01981 263 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 142 159 IPR020892 GO:0003755|GO:0006457
Vimu6g01981 263 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 95 259 - -
Vimu6g01981 263 FunFam Peptidyl-prolyl cis-trans isomerase 82 263 - -
Vimu6g01981 263 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 97 258 IPR002130 GO:0000413|GO:0003755
Vimu6g01981 263 SUPERFAMILY Cyclophilin-like 88 259 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01981 Vimu-Chr6 17775379 17777502 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01981 108 256 U-box Gene Family AT5G67530 44.667 1.19e-30 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01981 K03768 - gmx:100785805 438.728