Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01980 ATGACATCTGAGACTCAGAGGGCTCCTATGTTGCCGAACTCCTTTTTTAAAGTTATTCTTAGAACGAATCTTCAAACCGTTAAAATACCAAATATGTTTACTGCCAAATATGGAGATGATCTCCCAAATCCTTTCTTCATGAACCTTCCAAATCAAACTCAATGGAAAATGATTTGGGAAAATGAAAACGGTGAGATTTGGCTGAAAGAGGGGTGGAATGAATTTACGGAACATCATTCCTTGGACCACGAAGATCTTGTTTTATTTGAATACGTAGGAGCATATCAGATGAATGTAAATATATATAAGCAAAGTGGAGTAGAAATGGACTATCCACCCGAAGAAGAGAGCTCTGAACAAATAATTAGAAGGATGTAG 378 0.3677 MTSETQRAPMLPNSFFKVILRTNLQTVKIPNMFTAKYGDDLPNPFFMNLPNQTQWKMIWENENGEIWLKEGWNEFTEHHSLDHEDLVLFEYVGAYQMNVNIYKQSGVEMDYPPEEESSEQIIRRM 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01980 125 ProSiteProfiles B3 DNA-binding domain profile. 12 105 IPR003340 GO:0003677
Vimu6g01980 125 Gene3D - 10 106 IPR015300 -
Vimu6g01980 125 SMART B3_2 15 105 IPR003340 GO:0003677
Vimu6g01980 125 Pfam B3 DNA binding domain 22 102 IPR003340 GO:0003677
Vimu6g01980 125 CDD B3_DNA 14 103 IPR003340 GO:0003677
Vimu6g01980 125 PANTHER B3 DOMAIN-CONTAINING 14 115 - -
Vimu6g01980 125 SUPERFAMILY DNA-binding pseudobarrel domain 14 105 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01980 Vimu-Chr6 17770603 17771068 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01980 11 111 B3 DNA Binding Superfamily AT3G18990 27.885 9.38e-13 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vimu6g01980 B3 6.3e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01980 - - vra:106773422 217.238