Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01979 TTGTCTTCTCCCTCACTCAGCTCTCTACGGTTAGTCAAACACACACTCACTTCATTTCACACCTCTTCTCAATTCCCCTCAGAAGCCCCATCTTCCTTCGTTCATGATTCAGTTCGCCCACGCTTTCATTCATGTTCATCTGTCAGATTCCGCGCCGAAGAAGGAAAAAAACTCTGCCTTCTAAAATGGGTCTGCCTCTCTATTCGCCTCTCACCTCTCTTTCACCGCACCCTCTTTCCAGTTCTTAGATCTGTTTCCCAACCACTGTCCGCCAGGACAGTGTTTTGCTCTCTTTTTATGTTGCCTTGTCAAGAAGCAGCTAATGGGTCGCATCGCTTTCAGCCTCGGAATTTGATGACCATGATGATGATGATGATGGTGAAACCTTGTGGTGTTGGCATCTCTTTGTCAGGGGTGTTTGCATTTGTTGGAACAATAATGGGCAACGGCACTTCTCGTGTTGTTGGCTGTTTGGTGCCGTTTAATGGCAAAAGTGGTGTTGATTTGGAGTTTCTAGAGCCATTAGATGAAGGTTTAGGCCACTCTTTTTGTTACGTGAGGCCTTCTATTTTTGAATCTCCTGCCATTACCCCTTCAAACTCTGAGAGGTTCACCGTTGATTCTAGCACCCTTGATTCTGAAACATTGAGTGGTTCATTTAGGCATGAGAGCATCGAAGAGAGGCCTGGCAAGAATGTTCCGGAGACAACATTCAAGACAATATCAGGGGCTTCGGTCAGTGCCAATGTTTCCACTGCCAGGACTGGTAACCAGAATGCTCTACTTGCTAGTGATGTTCTAGAGCCTGCTGCATCCTTTGAGGGAACCTCGTCCTTTGCTGCAATCCCTTTGCAGCCTGTTCCCCGCGGTTCTGGACCTTTGAATGGATTCATGTCGGGACCCTTGGAGAGATTTGCTTCCGGTCCCTTGGATAAGGGTGGTGGTTTCATGTCTGGGCCGATAGAGAAGGGAGTAATGTCAGGACCTCTTGATGCCACTGACAAGTCCAACTTCTCAGCCCCCCTTGCTCGTGGTCGCCGAAGGCCACACCTCCAGCGCCTCATGAGAAGTGTGAGTGGTCCAATGAGAAACACTTTTTCTCGGACTTTTTCCAAGCACTCCATGGGTGTCAGTTGGGTGCAGCGGTTATTCCTTCATCCGGTGTCTCAACTAGCTTGGAATTCCAAAGAGGCGAAGTTTCGGTCTGAAGTTTCTAGAAACTGTACTGAAGTTGGATCATCTGACTTGGAGTATAAACATACACAAAATTTGCAGTGGGCTCATGGTAAGGCCGGTGAAGATAGGGTTCATGTTGTGCTTTCTGAAGAACAAGGGTGGTTGTTTATTGGGATATATGATGGTTTTAGTGGACCAGATGCACCTGATTTTCTGATGAGTCATCTTTATAAGTTTATAGACAAGGAATTAGAAGGGTTGCTCTGGGATTATGAAGATAATCCTGTTGATCCACTCAAACCTGATGTCCTTAATAATGGAAATGATGTAGTTGCTCTAGAATCCGGTAGGGAGGAAATGTCTGATGCTCATAACATTTCAAATGAAGAAAGACCCTGCTGTACAGAAACTTCTTGTCCAGTAATGGTCAAGGATCAGCCATCTAATAGTGAGATAGTGGAGGTAAATGCTGAAATTGAGGTAAATGTTGAACAGAAAAATTGTGGAAGTCCCAGTATTGAGCATCCTGTTCCTGTATCTGTTCCAATTGGACAATTGAGTGGTCAAGGCAGAAGAAGTGTGCGACTTTATGAGCTACTTCAGATGGAATCTTGGAATGAACAAGTGTCAGAACAAGGCAAGGATTCTATAGTTCCTGCTGAAATAACACAAGAAAGGCAGTTGAGGTTCTGCTCATCTGATGGTCAAGAGGATAGATCTGGACACCAGGATGAATGTCCTACTACTTCAGGGGAAAATGGACGCCCTGGGTTTAGTTCCACTAATCTGGAGCCTATAGCTCCCTTTTCTGTTTCAGGACAAAGACAGAATACAAGAAAGTCATTTATTGGTACAAAAATCAGAAAAATGTACAGGAAACAAAAGTCCTTACGTAAGAAACTTTTTCCTTGGAGTTATGATTGGCATAGGGAGGAAACTTGTTTTGACAAAAAATTAGTGAAATCCTCAGGACCCATTAGAATATGCAAGTCTGGAGTAGATCATAGTGCAGTTTTAAGAGCAATGGCTCGGGCTCTTGAAAGAACAGAAGAAGAATACTTGAAAATGGTGGAGAATAGTATGGATAAAAATCCAGAGCTTGCCTTAATGGGATCATGTGTTTTAGTGATGCTGATGAAGGATCAAGATGTCTATGTTATGAACCTAGGAGATAGTCGAGCCATTTTGGCTCAAGAACGACCAAATGATCGTCATCCTAATCCATGTCTCGTCAAAGATGACATGAGGCATAGGAATCGTTCTAGAGAGTCATTAGTAGGCATGGAGCTGGACAGAATTTCGGAGGAGTCCCCAGTGCACAATATTAATAAGCATGTTAACAAGATAAACAAAAATCGAGAGATATCCATGTGCAGATTGAAAATGAGGGCTGTTCAGCTTTCTACAGATCACAGCACAAGTATAGAAGAGGAGGTTTTTAGAATAAGAGCAGAACACCCTGATGATAATCAGGCCATATTTAATGATCGAGTGAAAGGACAATTAAAAGTGACCAGAGCATTTGGTGCTGGATTCCTGAAGAGGCCATGTTTTAACGAACCTCTACTGAAGATGTTTCGAGTTGATTATGTGGGCAATGGTCCTTACCTAAGTTGCGCTTCGTCTGTTGTTCATCATCGGCTTTCTTCAAGTGATCGGTTCCTGGTGCTGTCCTCTGACGGCTTATACCAATATTTCAGTAATGAAGAGGTGGTTGCCCATGTCACCTGGTTCATGGAAAATGTTCCCGAAGGCGATCCTGCACAATACCTTATAGCAGAGCTTCTATTCCGTGCTGCAAAAAAGAACGGAATGGATTTTCATGAATTGCTGGATATTCCTCATGGAGATCGCCGTAAATATCATGATGATGTTTCTGTTATGGTGGTTTCCTTGGAGGGAAGGATTTGGAGATCATCCGGATAA 3102 0.4381 MSSPSLSSLRLVKHTLTSFHTSSQFPSEAPSSFVHDSVRPRFHSCSSVRFRAEEGKKLCLLKWVCLSIRLSPLFHRTLFPVLRSVSQPLSARTVFCSLFMLPCQEAANGSHRFQPRNLMTMMMMMMVKPCGVGISLSGVFAFVGTIMGNGTSRVVGCLVPFNGKSGVDLEFLEPLDEGLGHSFCYVRPSIFESPAITPSNSERFTVDSSTLDSETLSGSFRHESIEERPGKNVPETTFKTISGASVSANVSTARTGNQNALLASDVLEPAASFEGTSSFAAIPLQPVPRGSGPLNGFMSGPLERFASGPLDKGGGFMSGPIEKGVMSGPLDATDKSNFSAPLARGRRRPHLQRLMRSVSGPMRNTFSRTFSKHSMGVSWVQRLFLHPVSQLAWNSKEAKFRSEVSRNCTEVGSSDLEYKHTQNLQWAHGKAGEDRVHVVLSEEQGWLFIGIYDGFSGPDAPDFLMSHLYKFIDKELEGLLWDYEDNPVDPLKPDVLNNGNDVVALESGREEMSDAHNISNEERPCCTETSCPVMVKDQPSNSEIVEVNAEIEVNVEQKNCGSPSIEHPVPVSVPIGQLSGQGRRSVRLYELLQMESWNEQVSEQGKDSIVPAEITQERQLRFCSSDGQEDRSGHQDECPTTSGENGRPGFSSTNLEPIAPFSVSGQRQNTRKSFIGTKIRKMYRKQKSLRKKLFPWSYDWHREETCFDKKLVKSSGPIRICKSGVDHSAVLRAMARALERTEEEYLKMVENSMDKNPELALMGSCVLVMLMKDQDVYVMNLGDSRAILAQERPNDRHPNPCLVKDDMRHRNRSRESLVGMELDRISEESPVHNINKHVNKINKNREISMCRLKMRAVQLSTDHSTSIEEEVFRIRAEHPDDNQAIFNDRVKGQLKVTRAFGAGFLKRPCFNEPLLKMFRVDYVGNGPYLSCASSVVHHRLSSSDRFLVLSSDGLYQYFSNEEVVAHVTWFMENVPEGDPAQYLIAELLFRAAKKNGMDFHELLDIPHGDRRKYHDDVSVMVVSLEGRIWRSSG 1033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01979 1033 Gene3D - 391 557 IPR036457 -
Vimu6g01979 1033 Pfam Protein phosphatase 2C 849 995 IPR001932 -
Vimu6g01979 1033 Pfam Protein phosphatase 2C 746 793 IPR001932 -
Vimu6g01979 1033 SMART PP2C_4 417 1022 IPR001932 -
Vimu6g01979 1033 CDD PP2Cc 726 1024 IPR001932 -
Vimu6g01979 1033 ProSiteProfiles PPM-type phosphatase domain profile. 415 1024 IPR001932 -
Vimu6g01979 1033 PANTHER PROTEIN PHOSPHATASE 2C 419 1023 IPR015655 GO:0004722|GO:0006470
Vimu6g01979 1033 MobiDBLite consensus disorder prediction 623 637 - -
Vimu6g01979 1033 MobiDBLite consensus disorder prediction 623 669 - -
Vimu6g01979 1033 FunFam Protein phosphatase 2C 32 394 562 - -
Vimu6g01979 1033 MobiDBLite consensus disorder prediction 638 669 - -
Vimu6g01979 1033 SUPERFAMILY PP2C-like 429 1025 IPR036457 -
Vimu6g01979 1033 Coils Coil 731 751 - -
Vimu6g01979 1033 Gene3D - 665 1030 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01979 Vimu-Chr6 17752292 17759115 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01979 147 1033 PP2C-type Phosphatase Gene Family AT2G46920 63.889 0.0 1106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01979 - - gmx:100786856 1681