Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01977 ATGATCATAGGAATATGCCATAATAGCATCAAATTAAACAATCCTTCATTGTCTTGTCACAGAGAGAGAGAGAAGATGGAAAAGTTCATTATGAGTGGTTTCATATTGCTTGTGGTGCTATTCACTACAGAACTTGGAGTGGCATCAGCTGCTTGGTTGCGAGCTCATGCAACATTCTATGGTGGAAGTGATGCCTCAGGAACAATGGGAGGAGCATGTGGCTATGGAAATCTCAACACAGATGGTTATGGTATAAAAACAGCTGCTTTGAGCACTGTTTTGTTTAATGACGGAAAATCATGCGGTGGTTGCTATACTATAGTTTGTGACGCAAGCCAAGTGCCCCAATGGTGCCTTAGGGGCACTTCCATCACTATCACTGCCACGAATTTCTGTCCCCCAAACTATGCTCTCCCTAATGACAATGGTGGTTGGTGTAATCCTCCTAGACCACACTTTGACATGTCTCAACCTGCATTTGAGACAATAGCAAAGTACAAAGCTGGGATTGTGCCAATTCTTTACAGGAAAGTTGGGTGCAAAAGAAGTGGAGGCATCAGATTTAGCATCAACGGGAGAGACTATTTTGAATTGGTGCTTATAAGCAACGTAGGTGGAGGTGGAGAGATTTCTAGAGTTTGGATCAAAGGGTCCAAAATGAACAAGTGGGAAAGCATGACAAGAAATTGGGGTGCTAACTGGCAAAGCCTGAGATATCTGAATGGTCAGAGTTTGTCTTTCAAAGTTCAACTCAGCAATGGGAAGACTCGCACTGCAATCAATGCAGCACCCTCCAATTGGAGATTTGGCCAGTCTTTCATCACCAATGTTCAGTTCTGA 840 0.4333 MIIGICHNSIKLNNPSLSCHREREKMEKFIMSGFILLVVLFTTELGVASAAWLRAHATFYGGSDASGTMGGACGYGNLNTDGYGIKTAALSTVLFNDGKSCGGCYTIVCDASQVPQWCLRGTSITITATNFCPPNYALPNDNGGWCNPPRPHFDMSQPAFETIAKYKAGIVPILYRKVGCKRSGGIRFSINGRDYFELVLISNVGGGGEISRVWIKGSKMNKWESMTRNWGANWQSLRYLNGQSLSFKVQLSNGKTRTAINAAPSNWRFGQSFITNVQF 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01977 279 PRINTS Expansin/Lol pI family signature 51 66 IPR007118 GO:0005576
Vimu6g01977 279 PRINTS Expansin/Lol pI family signature 223 237 IPR007118 GO:0005576
Vimu6g01977 279 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Vimu6g01977 279 PRINTS Expansin/Lol pI family signature 91 109 IPR007118 GO:0005576
Vimu6g01977 279 PRINTS Expansin/Lol pI family signature 168 184 IPR007118 GO:0005576
Vimu6g01977 279 PRINTS Expansin/Lol pI family signature 261 275 IPR007118 GO:0005576
Vimu6g01977 279 FunFam Expansin 42 181 - -
Vimu6g01977 279 SMART dpbb_1 87 175 IPR007112 -
Vimu6g01977 279 Gene3D - 42 181 IPR036908 -
Vimu6g01977 279 Pfam Lytic transglycolase 87 175 IPR009009 -
Vimu6g01977 279 PRINTS Expansin signature 160 173 IPR002963 GO:0009664
Vimu6g01977 279 PRINTS Expansin signature 143 160 IPR002963 GO:0009664
Vimu6g01977 279 PRINTS Expansin signature 124 134 IPR002963 GO:0009664
Vimu6g01977 279 PRINTS Expansin signature 232 253 IPR002963 GO:0009664
Vimu6g01977 279 PRINTS Expansin signature 82 96 IPR002963 GO:0009664
Vimu6g01977 279 PRINTS Expansin signature 184 196 IPR002963 GO:0009664
Vimu6g01977 279 PRINTS Expansin signature 196 217 IPR002963 GO:0009664
Vimu6g01977 279 PRINTS Expansin signature 111 122 IPR002963 GO:0009664
Vimu6g01977 279 PRINTS Expansin signature 261 277 IPR002963 GO:0009664
Vimu6g01977 279 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 195 275 IPR007117 -
Vimu6g01977 279 SUPERFAMILY Barwin-like endoglucanases 45 203 IPR036908 -
Vimu6g01977 279 Pfam Expansin C-terminal domain 186 264 IPR007117 -
Vimu6g01977 279 PANTHER EXPANSIN-A15 34 275 IPR002963 GO:0009664
Vimu6g01977 279 Gene3D - 185 279 IPR036749 -
Vimu6g01977 279 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 70 185 IPR007112 -
Vimu6g01977 279 CDD DPBB_EXPA_N 52 180 - -
Vimu6g01977 279 SUPERFAMILY PHL pollen allergen 182 274 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01977 Vimu-Chr6 17747430 17748464 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01977 35 279 Expansin Gene Family AT4G01630 77.143 6.34e-147 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01977 - - gmx:100787396 488.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01977 6 17747430 17748464 Vimu6g01977 6 17747430 17748464 ECH
Vimu6g01977 6 17747430 17748464 Vimu3g01945 3 34402504 34403877 PCT