Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01972 ATGGAGAGTCCCACTCCCACTTTCCTCCCCTCTGCCATCGCCACGCCCAATTCCTCCCTCCTCAGCGAAGAAGCCTTCAAAGGACTCGGCCGCCACTTCGACCAAACCGACCACCAATTCGAACACTCCTCCGATTCTCTCTCCGCCGAACCCTCCAACTCCGACGAACTCGACATTTCCAAGCTCGACTTGCCCTCGCGCCTCGTTGATTCCCTCAAGAGCCGCGGGATTACTCACCTTTTCCCCATTCAGAGAGCGGTAAGGTCTGGTAGGCTTCCCAGAGTTTTGGTGCTGGCCCCTACGAGGGAGTTGGCGAAGCAAGTGGAGAAGGAGATAAAGGAATCTGCTCCTTATCTCAACACTGTTTGTGTTTATGGCGGTGTTTCTTATGTTACTCAGCAGAGTGCTCTTTCACGAGGTGTAGATGTGGTGGTCGGGACCCCAGGGAGAATTATTGACTTGATTAATGGGAAGAGCCTTAAGCTGAACGAGGTTCAGTATTTGGTGCTTGATGAAGCAGATCAGATGCTTGCTGTTGGGTTTGAGGAGGATGTGGAAGTGATTTTAGAGAATCTCCCTTCTCAGAGGCAGAGCATGCTTTTCTCTGCCACCATGCCTGCTTGGGTGAAGAAGTTGGCGAGAAAATATTTGAACAACCCACTCACAATTGATTTGGTGAACTTTTGTTACTTTTGTCTTGCACTCTAA 708 0.5042 MESPTPTFLPSAIATPNSSLLSEEAFKGLGRHFDQTDHQFEHSSDSLSAEPSNSDELDISKLDLPSRLVDSLKSRGITHLFPIQRAVRSGRLPRVLVLAPTRELAKQVEKEIKESAPYLNTVCVYGGVSYVTQQSALSRGVDVVVGTPGRIIDLINGKSLKLNEVQYLVLDEADQMLAVGFEEDVEVILENLPSQRQSMLFSATMPAWVKKLARKYLNNPLTIDLVNFCYFCLAL 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01972 235 SMART ultradead3 76 233 IPR014001 -
Vimu6g01972 235 Pfam DEAD/DEAH box helicase 88 212 IPR011545 GO:0003676|GO:0005524
Vimu6g01972 235 CDD DEADc 68 224 - -
Vimu6g01972 235 Gene3D - 86 227 IPR027417 -
Vimu6g01972 235 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 91 225 - -
Vimu6g01972 235 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 54 223 IPR027417 -
Vimu6g01972 235 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 80 223 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01972 Vimu-Chr6 17678757 17684814 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01972 1 223 Eukaryotic Initiation Factors Gene Family AT1G72730 34.274 2.41e-31 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01972 - K16911 lja:Lj0g3v0055059.1 359.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01972 6 17678757 17684814 Vimu6g01972 6 17678757 17684814 ECH