Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu6g01972 | ATGGAGAGTCCCACTCCCACTTTCCTCCCCTCTGCCATCGCCACGCCCAATTCCTCCCTCCTCAGCGAAGAAGCCTTCAAAGGACTCGGCCGCCACTTCGACCAAACCGACCACCAATTCGAACACTCCTCCGATTCTCTCTCCGCCGAACCCTCCAACTCCGACGAACTCGACATTTCCAAGCTCGACTTGCCCTCGCGCCTCGTTGATTCCCTCAAGAGCCGCGGGATTACTCACCTTTTCCCCATTCAGAGAGCGGTAAGGTCTGGTAGGCTTCCCAGAGTTTTGGTGCTGGCCCCTACGAGGGAGTTGGCGAAGCAAGTGGAGAAGGAGATAAAGGAATCTGCTCCTTATCTCAACACTGTTTGTGTTTATGGCGGTGTTTCTTATGTTACTCAGCAGAGTGCTCTTTCACGAGGTGTAGATGTGGTGGTCGGGACCCCAGGGAGAATTATTGACTTGATTAATGGGAAGAGCCTTAAGCTGAACGAGGTTCAGTATTTGGTGCTTGATGAAGCAGATCAGATGCTTGCTGTTGGGTTTGAGGAGGATGTGGAAGTGATTTTAGAGAATCTCCCTTCTCAGAGGCAGAGCATGCTTTTCTCTGCCACCATGCCTGCTTGGGTGAAGAAGTTGGCGAGAAAATATTTGAACAACCCACTCACAATTGATTTGGTGAACTTTTGTTACTTTTGTCTTGCACTCTAA | 708 | 0.5042 | MESPTPTFLPSAIATPNSSLLSEEAFKGLGRHFDQTDHQFEHSSDSLSAEPSNSDELDISKLDLPSRLVDSLKSRGITHLFPIQRAVRSGRLPRVLVLAPTRELAKQVEKEIKESAPYLNTVCVYGGVSYVTQQSALSRGVDVVVGTPGRIIDLINGKSLKLNEVQYLVLDEADQMLAVGFEEDVEVILENLPSQRQSMLFSATMPAWVKKLARKYLNNPLTIDLVNFCYFCLAL | 235 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu6g01972 | 235 | SMART | ultradead3 | 76 | 233 | IPR014001 | - | |
Vimu6g01972 | 235 | Pfam | DEAD/DEAH box helicase | 88 | 212 | IPR011545 | GO:0003676|GO:0005524 | |
Vimu6g01972 | 235 | CDD | DEADc | 68 | 224 | - | - | |
Vimu6g01972 | 235 | Gene3D | - | 86 | 227 | IPR027417 | - | |
Vimu6g01972 | 235 | PANTHER | ATP-DEPENDENT RNA HELICASE RHLE-RELATED | 91 | 225 | - | - | |
Vimu6g01972 | 235 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 54 | 223 | IPR027417 | - | |
Vimu6g01972 | 235 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 80 | 223 | IPR014001 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu6g01972 | Vimu-Chr6 | 17678757 | 17684814 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vimu6g01972 | 1 | 223 | Eukaryotic Initiation Factors Gene Family | AT1G72730 | 34.274 | 2.41e-31 | 117 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu6g01972 | - | K16911 | lja:Lj0g3v0055059.1 | 359.377 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vimu6g01972 | 6 | 17678757 | 17684814 | Vimu6g01972 | 6 | 17678757 | 17684814 | ECH |