Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01970 ATGTTATCGCTGGTGGAGATTAGAGGGGCATCCGGCATATTTTCTGTGCTTGGAAAGAACTATGATTGTGGTTTCTTAAATTCTGGGAAAGGAATTAAGCAGATCATGTTTTCTTTACCAGATATAACAATGGAAGAATCATGGAGTACAAGTACAAGTGCATCTGCCTGCATAGTTCTCATAGTGCTCCTTACTCTAACATGCGCATGGAGGGTGCTGAATTGGTTATGGCTAAGGCCAAAGAGACTAGAGAGACTCCTAAGAGATCAAGGCCTTCAAGGAAATCCCTACAGCCTTTTCAATGGAGATTTGAAGCAGATTATGAAGATGCAAAAGGAAGTCACATCCAAACCCATGAAACTCTCTCATGATATAGCGCCACGTGTTTTTTCTTATCATCTGCAGAGTATCATCAAACATGGGAAGAATCCTTTTATTTGGTTTGGACGAAAACCAAGGGTGATCATCACAGAGCCTGAGTTAATCAAAGAAGTACTTAACAAGATCTATGCTTTTCCAAAGCCTGACACGAATCCCCTAGTCAAGTTAGTAGCTACTGGTCTTCTAAATTATGAGGGAGAAAAATGGAACAAGCACAGAAGAATAGTTAGTCCTGCATTCAATATGGAAAAGTTGAAGAATATGTTACCAATATTCTTCAACAGTTGCAATGATCTAATTATCAAGTGGGAGGAGATGTCTTCAGATGGATCATGTGAAATAGATCTATGGCCTTTCCTTCAAAGTTTAACCAGTGATGTTATTGCTCGAGCAGCATTTGGAAGTAGTTATGAAGAAGGAAGAAGAATATTTGAACTTCTAAAAGAGCAAGCACAACTTGCAGCGCAAAGTATGATGAAAGATTACATCCCTGGATGGAGATTTATACCAACTGCTATGCATAGGAGGATGAAGGAAATTAATAGAGAAATAAAAGCTTCACTTACAGATTTGATTAACAACAGAGAGAAAGCACTTGAGGTGGGTGAAACTACTGAGAATGACTTGTTATGTTTACTTTTGGAGTCAAATCACAAGGAAATTGAAGAACATGGAAACAGTAAGACTATTGGAATGAGTATTGAAGAGGTCACAATGATTTTGAATGAAGTTCTTAGGCTGTACTCACCAGTAATTGGCCTTAATAGAAATGTTGACGAAGATGTGAAACTTGGAAACCTATCATTACCTGCCGGAGTGCAAGTTTCCTTACCAACAATTATGGTTCACCATAGCCCTGAACTTTGGGGTGATGATGCCGATAGTTTCAATCCGGAAAGATTTTCTGAAGGAGTTCTAAAGGCCACTAATGGCAGAGTTTCATTTTTTCCATTTGGATGGGGTCCTAGAGTGTGCGTTGGACAAAACTTTTCCATGTTGGAGGCAAAGATGGCTTTGTCAATGATTTTACAACATTTCACATTTGAACTTTCTCCAGCTTATGCTCATGCTCCTGTTTCAGTGATTACTCTTCAACCCCAATATGGTGCTCATGTCATTTTACGTAAACTGCAAGTATAA 1521 0.3886 MLSLVEIRGASGIFSVLGKNYDCGFLNSGKGIKQIMFSLPDITMEESWSTSTSASACIVLIVLLTLTCAWRVLNWLWLRPKRLERLLRDQGLQGNPYSLFNGDLKQIMKMQKEVTSKPMKLSHDIAPRVFSYHLQSIIKHGKNPFIWFGRKPRVIITEPELIKEVLNKIYAFPKPDTNPLVKLVATGLLNYEGEKWNKHRRIVSPAFNMEKLKNMLPIFFNSCNDLIIKWEEMSSDGSCEIDLWPFLQSLTSDVIARAAFGSSYEEGRRIFELLKEQAQLAAQSMMKDYIPGWRFIPTAMHRRMKEINREIKASLTDLINNREKALEVGETTENDLLCLLLESNHKEIEEHGNSKTIGMSIEEVTMILNEVLRLYSPVIGLNRNVDEDVKLGNLSLPAGVQVSLPTIMVHHSPELWGDDADSFNPERFSEGVLKATNGRVSFFPFGWGPRVCVGQNFSMLEAKMALSMILQHFTFELSPAYAHAPVSVITLQPQYGAHVILRKLQV 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01970 506 SUPERFAMILY Cytochrome P450 127 502 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g01970 506 PANTHER CYTOCHROME P450 FAMILY MEMBER 67 364 - -
Vimu6g01970 506 Gene3D Cytochrome P450 364 505 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g01970 506 Pfam Cytochrome P450 139 356 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g01970 506 Pfam Cytochrome P450 364 479 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g01970 506 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 445 454 IPR017972 GO:0005506|GO:0016705
Vimu6g01970 506 Gene3D Cytochrome P450 77 363 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g01970 506 PRINTS P450 superfamily signature 366 377 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g01970 506 PRINTS P450 superfamily signature 443 452 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g01970 506 PRINTS P450 superfamily signature 452 463 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g01970 506 PRINTS E-class P450 group I signature 406 430 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g01970 506 PRINTS E-class P450 group I signature 452 475 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g01970 506 PRINTS E-class P450 group I signature 250 268 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g01970 506 PRINTS E-class P450 group I signature 137 156 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu6g01970 506 PRINTS E-class P450 group I signature 442 452 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01970 Vimu-Chr6 17667312 17671259 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01970 54 504 Cytochrome P450 AT3G14690 46.548 6.26e-168 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01970 - K23809 gmx:100780780 729.554