Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu6g01967 | ATGGCGTGGCGCGAGCTTGGAAAGAAGAGAATATATATGAATTTTACTAGAGCTTTGACTGCATCGGCATTTAGGCACGTGACAGGATCAAGTTTTGCATCCCCCTTTGCTGCACAATCTGTTTATGCATCGGTAAAATGCGTGACAGATTTCATCAACCAATCTCAGGGAGTGGCTGGTTTTGGCAGTGAGACTAAAGAATGTGGAATACGGTGCTTCCATGCTAGTTCTCCTGTCTGGGCAAGAAGTGATGAACCATTAGGTGTGAAGACTCCAAAGAGGGTGAAATATGTGAAAAGGGCTGGTAGAAACCATCTGCCTGTTAAAGCTCCTTATGCCCGTCCTAATGTCTCAGCTAACAAATCAAATCCTGATAAAACAATAGAAATATTTGAAGGCATGACCCTTGTTGAACTGGCAAAGCGCACTGGAAAATCAGTATCTTCTTTGCAGGATATCCTCACGAATGTTGGTGAAAAGGTTGAATCAGAGTTTGAGCTTCTCAGCATGGATGTTGCTGAACTTGCCGCAATGGAGGCTGGCATCAATGTTAAGAGGCTACATTCTGCCGAAGGTACAGAAATTTTACCTCGTCCCGCAGTTGTAACTGTGATGGGTCATGTTGATCATGGTAAAACATCTCTTCTTGATGCCTTGCGTCAAACATCAGTAGCAGCCGGGGAGGCTGGTGGCATAACTCAACATCTAGGTGCTTTTGTTGTGGTCATGCCATCAGGAGCATCAATCACATTTCTTGATACTCCTGGTCATGCTGCATTTAGTGCGATGCGGGCAAGAGGTGCAGCAGTTACAGATATAGTGGTGCTGGTTGTTGCTGCAGATGATGGTGTCATGCCTCAAACACTTGAAGCTATGTCCCATGCAAAGGCAGCTAATGTACCAATTGTAGTTGCAATTAATAAATGTGATAAACCAGGTGCAAATCCTGAAAAAGTTAAACTACAGCTTGCTTCAGAGGGCTTGCTGCTGGAGGAGATGGGTGGGGATGTTCAGGTTGTTGAAGTTTCAGCAACTGAAAAAATTGGACTGGATAACCTAGAGGAATCCTTACTACTTCAGGCAGATATGATGGATCTTAAAGCACGAATTGATGGGCCTGCTCAAGCATATGTGGTGGAAGCAAGACTTGACAAGGGACGGGGTCCATTGGTAACTACTATAGTAAAGGCAGGGACTCTAGTTTGTGGTCAGCATGTTGTCGTAGGCTCACAATGGGGAAGAATAAGGGCTATTAAAGATACGGCAGGGAAGTTAACTCAACGAGCAACGCCTGCTATGCCTGTTGAGATCGAAGGGCTTAGAGGGTTGCCAATGGCTGGTGATGATGTTATTGTTGTTCAATCTGAGGAGCGAGCTAGAATGCTTAGTTCTGGTAGGCAAAAGAAATACGAGGAGAACAGGCTAAGGAATAAGATGATACAGGACAAACCAACCACTTCAGATGATTCCATGGAGGTTCCAGTGAGGGTTGAAATGCCAGTGATAGTAAAAGCAGATGTTCAGGGAACTGTTCAAGCTGTCACTGATGCTTTGAAAACTTTAAACAGTGCTCAGGTTTTGGTGAATGTTGTTCATGTTGGCGTTGGGCCACTTTCTCAATCTGATGTGGACTTAGCACAAGCTTGCGGTGCTTGCATAGTTGGATTCAATGTCAAAAGTCCTCCTACTGCTCTAAGTCAGGCAGCAACTCGTGCCAGTATCAAGATAATCCTGCACCGTGTAATTTACCACCTTTTGGAGGACATAGGCAATTTGATAATAGAGAAGGCTCCTGGAACTTCTGAAACCCAGGTGGCTGGACAGGCAGAAGTGCTTAACATCTATGAAATCAAAGGGAGCAAGTCGAAGGGTCCTGATGTGAAGATAGCTGGTTGTCGTGTTATTGATGGTTTTGTGACAAGATCAGCAACCATGAGGCTTCTGAGGAGTGGAGAAGTGGTGTTTGAAGGAAATTGTACGTCTCTTAAGCGGGAAAAGCAGGATGTGGATACTGTGAAAAAGGGAAGTGAGTGTGGACTAGTAATTAGCAATTGGTATGATTTCCGAGTTGGAGATGTTATTCAGTGCTTAGAACAAGTTGTAAGGAAGCCCAAGTTCGTCAAGTCAGAGAGTGGTGCTGTTCGAATTGAATGTTGA | 2157 | 0.446 | MAWRELGKKRIYMNFTRALTASAFRHVTGSSFASPFAAQSVYASVKCVTDFINQSQGVAGFGSETKECGIRCFHASSPVWARSDEPLGVKTPKRVKYVKRAGRNHLPVKAPYARPNVSANKSNPDKTIEIFEGMTLVELAKRTGKSVSSLQDILTNVGEKVESEFELLSMDVAELAAMEAGINVKRLHSAEGTEILPRPAVVTVMGHVDHGKTSLLDALRQTSVAAGEAGGITQHLGAFVVVMPSGASITFLDTPGHAAFSAMRARGAAVTDIVVLVVAADDGVMPQTLEAMSHAKAANVPIVVAINKCDKPGANPEKVKLQLASEGLLLEEMGGDVQVVEVSATEKIGLDNLEESLLLQADMMDLKARIDGPAQAYVVEARLDKGRGPLVTTIVKAGTLVCGQHVVVGSQWGRIRAIKDTAGKLTQRATPAMPVEIEGLRGLPMAGDDVIVVQSEERARMLSSGRQKKYEENRLRNKMIQDKPTTSDDSMEVPVRVEMPVIVKADVQGTVQAVTDALKTLNSAQVLVNVVHVGVGPLSQSDVDLAQACGACIVGFNVKSPPTALSQAATRASIKIILHRVIYHLLEDIGNLIIEKAPGTSETQVAGQAEVLNIYEIKGSKSKGPDVKIAGCRVIDGFVTRSATMRLLRSGEVVFEGNCTSLKREKQDVDTVKKGSECGLVISNWYDFRVGDVIQCLEQVVRKPKFVKSESGAVRIEC | 718 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu6g01967 | 718 | FunFam | Translation initiation factor IF-2 | 194 | 369 | - | - | |
Vimu6g01967 | 718 | SUPERFAMILY | Initiation factor IF2/eIF5b, domain 3 | 498 | 606 | IPR036925 | - | |
Vimu6g01967 | 718 | Gene3D | Translation factors | 370 | 486 | - | - | |
Vimu6g01967 | 718 | FunFam | Translation initiation factor IF-2 | 602 | 705 | - | - | |
Vimu6g01967 | 718 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 197 | 367 | IPR000795 | GO:0003924|GO:0005525 | |
Vimu6g01967 | 718 | FunFam | Translation initiation factor IF-2 | 495 | 601 | - | - | |
Vimu6g01967 | 718 | CDD | IF2_mtIF2_II | 373 | 468 | IPR044145 | - | |
Vimu6g01967 | 718 | CDD | mtIF2_IVc | 607 | 696 | - | - | |
Vimu6g01967 | 718 | Gene3D | - | 495 | 599 | IPR036925 | - | |
Vimu6g01967 | 718 | Pfam | Elongation factor Tu GTP binding domain | 202 | 357 | IPR000795 | GO:0003924|GO:0005525 | |
Vimu6g01967 | 718 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 198 | 388 | IPR027417 | - | |
Vimu6g01967 | 718 | Pfam | Translation-initiation factor 2 | 496 | 589 | IPR023115 | - | |
Vimu6g01967 | 718 | NCBIfam | small GTP-binding protein domain | 200 | 352 | IPR005225 | GO:0005525 | |
Vimu6g01967 | 718 | Gene3D | - | 195 | 369 | IPR027417 | - | |
Vimu6g01967 | 718 | Hamap | Translation initiation factor IF-2 [infB]. | 8 | 704 | IPR000178 | GO:0003743|GO:0003924|GO:0005525|GO:0006413 | |
Vimu6g01967 | 718 | NCBIfam | translation initiation factor IF-2 | 125 | 701 | IPR000178 | GO:0003743|GO:0003924|GO:0005525|GO:0006413 | |
Vimu6g01967 | 718 | CDD | IF2_eIF5B | 201 | 364 | - | - | |
Vimu6g01967 | 718 | PANTHER | TRANSLATION INITIATION FACTOR IF-2-RELATED | 117 | 711 | IPR015760 | - | |
Vimu6g01967 | 718 | Gene3D | Translation factors | 601 | 703 | - | - | |
Vimu6g01967 | 718 | SUPERFAMILY | Translation proteins | 602 | 703 | IPR009000 | - | |
Vimu6g01967 | 718 | SUPERFAMILY | Translation proteins | 371 | 453 | IPR009000 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu6g01967 | Vimu-Chr6 | 17648473 | 17653092 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vimu6g01967 | 198 | 587 | Eukaryotic Initiation Factors Gene Family | AT1G21160 | 27.862 | 2.17e-26 | 114 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu6g01967 | K02519 | - | gmx:100781314 | 1249.57 |