Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01967 ATGGCGTGGCGCGAGCTTGGAAAGAAGAGAATATATATGAATTTTACTAGAGCTTTGACTGCATCGGCATTTAGGCACGTGACAGGATCAAGTTTTGCATCCCCCTTTGCTGCACAATCTGTTTATGCATCGGTAAAATGCGTGACAGATTTCATCAACCAATCTCAGGGAGTGGCTGGTTTTGGCAGTGAGACTAAAGAATGTGGAATACGGTGCTTCCATGCTAGTTCTCCTGTCTGGGCAAGAAGTGATGAACCATTAGGTGTGAAGACTCCAAAGAGGGTGAAATATGTGAAAAGGGCTGGTAGAAACCATCTGCCTGTTAAAGCTCCTTATGCCCGTCCTAATGTCTCAGCTAACAAATCAAATCCTGATAAAACAATAGAAATATTTGAAGGCATGACCCTTGTTGAACTGGCAAAGCGCACTGGAAAATCAGTATCTTCTTTGCAGGATATCCTCACGAATGTTGGTGAAAAGGTTGAATCAGAGTTTGAGCTTCTCAGCATGGATGTTGCTGAACTTGCCGCAATGGAGGCTGGCATCAATGTTAAGAGGCTACATTCTGCCGAAGGTACAGAAATTTTACCTCGTCCCGCAGTTGTAACTGTGATGGGTCATGTTGATCATGGTAAAACATCTCTTCTTGATGCCTTGCGTCAAACATCAGTAGCAGCCGGGGAGGCTGGTGGCATAACTCAACATCTAGGTGCTTTTGTTGTGGTCATGCCATCAGGAGCATCAATCACATTTCTTGATACTCCTGGTCATGCTGCATTTAGTGCGATGCGGGCAAGAGGTGCAGCAGTTACAGATATAGTGGTGCTGGTTGTTGCTGCAGATGATGGTGTCATGCCTCAAACACTTGAAGCTATGTCCCATGCAAAGGCAGCTAATGTACCAATTGTAGTTGCAATTAATAAATGTGATAAACCAGGTGCAAATCCTGAAAAAGTTAAACTACAGCTTGCTTCAGAGGGCTTGCTGCTGGAGGAGATGGGTGGGGATGTTCAGGTTGTTGAAGTTTCAGCAACTGAAAAAATTGGACTGGATAACCTAGAGGAATCCTTACTACTTCAGGCAGATATGATGGATCTTAAAGCACGAATTGATGGGCCTGCTCAAGCATATGTGGTGGAAGCAAGACTTGACAAGGGACGGGGTCCATTGGTAACTACTATAGTAAAGGCAGGGACTCTAGTTTGTGGTCAGCATGTTGTCGTAGGCTCACAATGGGGAAGAATAAGGGCTATTAAAGATACGGCAGGGAAGTTAACTCAACGAGCAACGCCTGCTATGCCTGTTGAGATCGAAGGGCTTAGAGGGTTGCCAATGGCTGGTGATGATGTTATTGTTGTTCAATCTGAGGAGCGAGCTAGAATGCTTAGTTCTGGTAGGCAAAAGAAATACGAGGAGAACAGGCTAAGGAATAAGATGATACAGGACAAACCAACCACTTCAGATGATTCCATGGAGGTTCCAGTGAGGGTTGAAATGCCAGTGATAGTAAAAGCAGATGTTCAGGGAACTGTTCAAGCTGTCACTGATGCTTTGAAAACTTTAAACAGTGCTCAGGTTTTGGTGAATGTTGTTCATGTTGGCGTTGGGCCACTTTCTCAATCTGATGTGGACTTAGCACAAGCTTGCGGTGCTTGCATAGTTGGATTCAATGTCAAAAGTCCTCCTACTGCTCTAAGTCAGGCAGCAACTCGTGCCAGTATCAAGATAATCCTGCACCGTGTAATTTACCACCTTTTGGAGGACATAGGCAATTTGATAATAGAGAAGGCTCCTGGAACTTCTGAAACCCAGGTGGCTGGACAGGCAGAAGTGCTTAACATCTATGAAATCAAAGGGAGCAAGTCGAAGGGTCCTGATGTGAAGATAGCTGGTTGTCGTGTTATTGATGGTTTTGTGACAAGATCAGCAACCATGAGGCTTCTGAGGAGTGGAGAAGTGGTGTTTGAAGGAAATTGTACGTCTCTTAAGCGGGAAAAGCAGGATGTGGATACTGTGAAAAAGGGAAGTGAGTGTGGACTAGTAATTAGCAATTGGTATGATTTCCGAGTTGGAGATGTTATTCAGTGCTTAGAACAAGTTGTAAGGAAGCCCAAGTTCGTCAAGTCAGAGAGTGGTGCTGTTCGAATTGAATGTTGA 2157 0.446 MAWRELGKKRIYMNFTRALTASAFRHVTGSSFASPFAAQSVYASVKCVTDFINQSQGVAGFGSETKECGIRCFHASSPVWARSDEPLGVKTPKRVKYVKRAGRNHLPVKAPYARPNVSANKSNPDKTIEIFEGMTLVELAKRTGKSVSSLQDILTNVGEKVESEFELLSMDVAELAAMEAGINVKRLHSAEGTEILPRPAVVTVMGHVDHGKTSLLDALRQTSVAAGEAGGITQHLGAFVVVMPSGASITFLDTPGHAAFSAMRARGAAVTDIVVLVVAADDGVMPQTLEAMSHAKAANVPIVVAINKCDKPGANPEKVKLQLASEGLLLEEMGGDVQVVEVSATEKIGLDNLEESLLLQADMMDLKARIDGPAQAYVVEARLDKGRGPLVTTIVKAGTLVCGQHVVVGSQWGRIRAIKDTAGKLTQRATPAMPVEIEGLRGLPMAGDDVIVVQSEERARMLSSGRQKKYEENRLRNKMIQDKPTTSDDSMEVPVRVEMPVIVKADVQGTVQAVTDALKTLNSAQVLVNVVHVGVGPLSQSDVDLAQACGACIVGFNVKSPPTALSQAATRASIKIILHRVIYHLLEDIGNLIIEKAPGTSETQVAGQAEVLNIYEIKGSKSKGPDVKIAGCRVIDGFVTRSATMRLLRSGEVVFEGNCTSLKREKQDVDTVKKGSECGLVISNWYDFRVGDVIQCLEQVVRKPKFVKSESGAVRIEC 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01967 718 FunFam Translation initiation factor IF-2 194 369 - -
Vimu6g01967 718 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 498 606 IPR036925 -
Vimu6g01967 718 Gene3D Translation factors 370 486 - -
Vimu6g01967 718 FunFam Translation initiation factor IF-2 602 705 - -
Vimu6g01967 718 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 197 367 IPR000795 GO:0003924|GO:0005525
Vimu6g01967 718 FunFam Translation initiation factor IF-2 495 601 - -
Vimu6g01967 718 CDD IF2_mtIF2_II 373 468 IPR044145 -
Vimu6g01967 718 CDD mtIF2_IVc 607 696 - -
Vimu6g01967 718 Gene3D - 495 599 IPR036925 -
Vimu6g01967 718 Pfam Elongation factor Tu GTP binding domain 202 357 IPR000795 GO:0003924|GO:0005525
Vimu6g01967 718 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 198 388 IPR027417 -
Vimu6g01967 718 Pfam Translation-initiation factor 2 496 589 IPR023115 -
Vimu6g01967 718 NCBIfam small GTP-binding protein domain 200 352 IPR005225 GO:0005525
Vimu6g01967 718 Gene3D - 195 369 IPR027417 -
Vimu6g01967 718 Hamap Translation initiation factor IF-2 [infB]. 8 704 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Vimu6g01967 718 NCBIfam translation initiation factor IF-2 125 701 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Vimu6g01967 718 CDD IF2_eIF5B 201 364 - -
Vimu6g01967 718 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 117 711 IPR015760 -
Vimu6g01967 718 Gene3D Translation factors 601 703 - -
Vimu6g01967 718 SUPERFAMILY Translation proteins 602 703 IPR009000 -
Vimu6g01967 718 SUPERFAMILY Translation proteins 371 453 IPR009000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01967 Vimu-Chr6 17648473 17653092 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01967 198 587 Eukaryotic Initiation Factors Gene Family AT1G21160 27.862 2.17e-26 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01967 K02519 - gmx:100781314 1249.57