Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01964 ATGATGTCATCTGACAAGGTCCATAGTAGCTTTGCATCTCTATTAGAGCAATCAAACAGATTCCATTCTTCCTTGCGAGATATTAACTTAGTGATTCTGTGCTTGTGGTTTATTTCAAGTGCAGTTGAAGTGACAATGTCCTCCTCAAGGCCTAGCCAATCATCCAGCAATAATTCTGGCAGATCAAGATCATCAAGACGCAGTGCTAGGGTTCTTGCTCAGACAACTTTAGACGCAAAACTGCATGCAACTTTCGAGGAATCCGGTAGTTCTTTTAACTACTCCAATTCAGTGAGATTGTCTCCTGGCACAGGCACTGCCAGTGGTGATCATCAACCAAGGTCTGATGAAGTAACAACTGCTTACCTCCATCAGTTACAGAAAAGCAAGCTTATCCAACCATTTGGGTGCTTGCTAGCGTTAGATGAGAAAACATTTAGGGTCATTGCTTACAGTGAGAATGCACCTGAAATGCTCACCATGGTTAGCCATGCTGTCCCCAGTGTTGGTGACCACCCTGCTCTTGGCATCGGCACAGACATAAGAACTATTTTCACTTCCCCGAGTTCTACTTCTATTCAGAAGGCACTGGGATTTGGGGAGGTTTCACTTCTTAACCCCATTCTAGTTCATTGCAAGTCCTCTGGGAAGCCCTTTTATGCAATTATCCATCGTGTTACCGGCAGTGTGATCATTGATTTTGAGCCAGTCAAGCCTCATGAAGTTCCCATGACTGCAGCAGGGGCCCTGCAGTCCTATAAATTTGCAGCAAAAGCAATAACTAGATTGCAATCGTTGCCTAGTGGGAACATGGACACTCTGTGTGACACAATGGTTCGAGAGGTTTTTGAACTAACAGGTTATGATAGAGTGATGGCTTATAAATTTCATGAGGATGATCACGGGGAAGTGATTGCTGAAGTGAAAAGGCCAGACCTAGAGCCGTATCTGGGGTTGCACTACCCAGCAACTGATATTCCTCAGGCTACACGTTTTTTGTTTATGAAGAACAAGGTGCGTATGATAGTTGATTGCCGTGCAAAGCATGTGAAGGTGCTTCAGGACAAAAAAATTCCATTTGAATTAACTCTGTGTGGATCAACCTTGAGGGCTGCTCATAGTTGTCACTTGCAGTACATGCAAAATATGAATTCTAGTGCTTCCTTGGTTATGGCCGTTGTGGTCAATGACAATGATGAAGATGGGGATAGTTCTGATGCTGTTCAGCCACAGAAGAGAAAGAGATTATGGGGTTTAGTAGTTTGCCATCACTCCACTCCCAGGTTTGTTCCTTTCCCTCTCAGGTATGCTTGCGAATTCCTGGCTCAGGTATTTGCCATCCATGTGAACAAAGAACTTGAAATAGAGTATCAGATTATTGAGAAGAGTATCCTGAGGACTCAAACACTCTTGTGCGATATGCTGATGCGAGATGCACCCCTAGGTATTGTATCACAGAGTCCTAACATAATGGATCTTGTTAAGTGCGATGGTGCAGCACTGTTGTATAAAAACAAGGTATGGAGATTAGGGGTAACGCCAAGTGAATCCCAGATAAGAGAGATAGCTTTGTGGCTCTCTGAATGTCACGGGGATTCCACAGGTTTGAGTACAGATAGCTTGTCTGATGCAGGCTTCCCAGGGGCTGCTACTCTTGGTGATATAACTTGTGGAATGGCAGCTGTCAGAATATCTTCCAAAGATATAGTTTTGTGGTTCCGATCTCACACAGCCGCAGAAATTCGATGGGGTGGTGCAAAGCATGAGCCTGGTGAAAGGGATGATGGTAGCAGGATGCATCCAAGATCTTCATTCAAGGCTTTCCTTGAAGTTGTGAAGACAAGGAGTTTGCCCTGGAAGGATTATGAAATGGACGCCATTCATTCATTGCAGCTAATACTGAGAAATGCATTCAAGGACAACGAGAGTATGGAGATAAGCACATATGCTATCAATACAAGATTAGGTGATTTGAAAATTGAAGGGATGCAAGAACTGGAAGCAGTGACTAGTGAGATGGTAAGGTTAATTGAAACAGCAACAGTACCAATTTTGGCTGTTGATGTCAATGGAATGGTCAACGGATGGAATACAAAAATTGCTGAGTTGACATGTCTTCCAGTTGAGCAAGCTATTGGGAAGCATTTACTCACTCTTGTTGAAGATTTTTCAGTAGATAGAGTCAAGAAGATGTTGGACATGGCACTGCAGGGTGAGGAAGAGAAAAGTGTGCAATTTGAGATCAAAACACACGATTTGAAGATTGATTCTGGTCCTATCAGCTTGGTGGTTAATGCTTGTGCAAGCAGGGATCTTCAAGATAATGTTGTGGGGGTTTGTTTTGTGGCCCAAGATATAACTGCTCAGAAGACAGTGATGGACAAATTCACCCGAATTGAAGGAGACTACAAGGCAATTGTGCAGAACCCAAACCCATTGATCCCTCCAATATTTGGCACAGATGAATTTGGGTGGTGTTGTGAATGGAATCCAGCTATGACAAAGTTAACTGGATGGAAGCGAGAGGAGGTGATGGATAAAATGCTTTTAGGGGAGGTTTTTGGTACACATATAGCTTATTGTCGTCTGAGGAATCAGGAAGCTGTTGTTAACTTCAGCATTGTACTTAACAAAGCCATGGCTGGTTTGGAAACAGAGAAGGTTCCTTTTAGTTTCATTACTCGTGATGGGAAACACGTAGAATGTCTGCTTTCTGTGAGTAAGAAGTTGGATGCAGAGGGTGTAGTTACCGGAGTCTTCTGCTTCTTGCAACTAGCTAGTCCAGAGCTACAACAAGCATTACACATTCAGCACCTATCTGAACAAACTGCATCCAAAAGACTGAAAGCTTTAACTTATTTGAAAAGGCAAATTCGGAGTCCTTTATACGGGATTGTTTTCACCCGGAAATTGTTACAAGGTACTCAGTTGGGACCTGAACAAATACAATTTCTGCAAACGGGTACTCGGTGTCAACGCCAACTTAGCAAAGTCCTGGATGACTCAGATCTTGACAGCATCATTGATGGGTACCTGGATTTGGAGATGCTTGAATTTACTCTGCATGAAGTGTTAGTTGCCTCCTTAAGTCAAGCCATGACAAAAGGTAATGCAAAAGGTGTCCGAGTGGTCAATGATGTTGAAGAGCAGATCACAACAGAAACCTTATACGGTGATGGTCTCAGGCTCCAGCAGGTCTTAGCCGACTTTTTATTGGTTTCCATCAATTTCACACCAACTGGAGGTCAGGTTGTTGTGGCAGCCTCATTAACAAAACAGCAGTTAGGGAAACTAGTTCATCTTGCTAATTTGGAGCTCAGCATAACACATGATGGTTTTGGGGTTCCAGAAACACTGCTGAACCAAATGTTTGGACGTGATGGTGATGAATCCGAGGAAGGTATCAGCATGCTGATTAGCAGAAAGCTGCTAAAGCTGATGAATGGAGAAGTACGTTATATAAGGGAAGCAGGCAATTCATCTTTCATCTTATCTCTTGAACTTGCCGCAGCTCATAAATCCAACACTTAA 3531 0.4322 MMSSDKVHSSFASLLEQSNRFHSSLRDINLVILCLWFISSAVEVTMSSSRPSQSSSNNSGRSRSSRRSARVLAQTTLDAKLHATFEESGSSFNYSNSVRLSPGTGTASGDHQPRSDEVTTAYLHQLQKSKLIQPFGCLLALDEKTFRVIAYSENAPEMLTMVSHAVPSVGDHPALGIGTDIRTIFTSPSSTSIQKALGFGEVSLLNPILVHCKSSGKPFYAIIHRVTGSVIIDFEPVKPHEVPMTAAGALQSYKFAAKAITRLQSLPSGNMDTLCDTMVREVFELTGYDRVMAYKFHEDDHGEVIAEVKRPDLEPYLGLHYPATDIPQATRFLFMKNKVRMIVDCRAKHVKVLQDKKIPFELTLCGSTLRAAHSCHLQYMQNMNSSASLVMAVVVNDNDEDGDSSDAVQPQKRKRLWGLVVCHHSTPRFVPFPLRYACEFLAQVFAIHVNKELEIEYQIIEKSILRTQTLLCDMLMRDAPLGIVSQSPNIMDLVKCDGAALLYKNKVWRLGVTPSESQIREIALWLSECHGDSTGLSTDSLSDAGFPGAATLGDITCGMAAVRISSKDIVLWFRSHTAAEIRWGGAKHEPGERDDGSRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDNESMEISTYAINTRLGDLKIEGMQELEAVTSEMVRLIETATVPILAVDVNGMVNGWNTKIAELTCLPVEQAIGKHLLTLVEDFSVDRVKKMLDMALQGEEEKSVQFEIKTHDLKIDSGPISLVVNACASRDLQDNVVGVCFVAQDITAQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCCEWNPAMTKLTGWKREEVMDKMLLGEVFGTHIAYCRLRNQEAVVNFSIVLNKAMAGLETEKVPFSFITRDGKHVECLLSVSKKLDAEGVVTGVFCFLQLASPELQQALHIQHLSEQTASKRLKALTYLKRQIRSPLYGIVFTRKLLQGTQLGPEQIQFLQTGTRCQRQLSKVLDDSDLDSIIDGYLDLEMLEFTLHEVLVASLSQAMTKGNAKGVRVVNDVEEQITTETLYGDGLRLQQVLADFLLVSINFTPTGGQVVVAASLTKQQLGKLVHLANLELSITHDGFGVPETLLNQMFGRDGDESEEGISMLISRKLLKLMNGEVRYIREAGNSSFILSLELAAAHKSNT 1176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01964 1176 Gene3D PAS domain 126 373 - -
Vimu6g01964 1176 Gene3D - 251 614 IPR029016 -
Vimu6g01964 1176 ProSiteProfiles PAS repeat profile. 802 854 IPR000014 -
Vimu6g01964 1176 SUPERFAMILY PYP-like sensor domain (PAS domain) 127 239 IPR035965 -
Vimu6g01964 1176 FunFam Phytochrome 665 796 - -
Vimu6g01964 1176 FunFam Phytochrome 458 589 - -
Vimu6g01964 1176 Gene3D PAS domain 815 927 - -
Vimu6g01964 1176 SMART gaf_1 270 463 IPR003018 GO:0005515
Vimu6g01964 1176 NCBIfam PAS domain S-box protein 676 792 IPR000014 -
Vimu6g01964 1176 SMART pas_2 671 737 IPR000014 -
Vimu6g01964 1176 SMART pas_2 801 870 IPR000014 -
Vimu6g01964 1176 Pfam PAS fold 802 924 IPR013767 GO:0006355
Vimu6g01964 1176 Pfam PAS fold 672 786 IPR013767 GO:0006355
Vimu6g01964 1176 Gene3D - 1015 1175 IPR036890 -
Vimu6g01964 1176 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 270 443 IPR016132 -
Vimu6g01964 1176 SUPERFAMILY PYP-like sensor domain (PAS domain) 675 782 IPR035965 -
Vimu6g01964 1176 SMART HisKA_10 946 1011 IPR003661 GO:0000155|GO:0007165
Vimu6g01964 1176 CDD PAS 680 786 IPR000014 -
Vimu6g01964 1176 SUPERFAMILY PYP-like sensor domain (PAS domain) 816 922 IPR035965 -
Vimu6g01964 1176 PANTHER TWO-COMPONENT HISTIDINE KINASE 958 1154 - -
Vimu6g01964 1176 Pfam GAF domain 270 453 IPR003018 GO:0005515
Vimu6g01964 1176 ProSiteProfiles Histidine kinase domain profile. 953 1170 IPR005467 -
Vimu6g01964 1176 SUPERFAMILY GAF domain-like 461 639 - -
Vimu6g01964 1176 PRINTS Phytochrome signature 764 781 IPR001294 GO:0006355|GO:0009584
Vimu6g01964 1176 PRINTS Phytochrome signature 672 688 IPR001294 GO:0006355|GO:0009584
Vimu6g01964 1176 PRINTS Phytochrome signature 784 804 IPR001294 GO:0006355|GO:0009584
Vimu6g01964 1176 PRINTS Phytochrome signature 691 706 IPR001294 GO:0006355|GO:0009584
Vimu6g01964 1176 PRINTS Phytochrome signature 601 619 IPR001294 GO:0006355|GO:0009584
Vimu6g01964 1176 PRINTS Phytochrome signature 483 503 IPR001294 GO:0006355|GO:0009584
Vimu6g01964 1176 PRINTS Phytochrome signature 370 391 IPR001294 GO:0006355|GO:0009584
Vimu6g01964 1176 PRINTS Phytochrome signature 568 587 IPR001294 GO:0006355|GO:0009584
Vimu6g01964 1176 PRINTS Phytochrome signature 285 304 IPR001294 GO:0006355|GO:0009584
Vimu6g01964 1176 PRINTS Phytochrome signature 185 207 IPR001294 GO:0006355|GO:0009584
Vimu6g01964 1176 Pfam Phytochrome region 466 641 IPR013515 GO:0006355|GO:0009584
Vimu6g01964 1176 Gene3D - 458 631 IPR043150 -
Vimu6g01964 1176 PIRSF Phytochrome_conventional 46 1176 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Vimu6g01964 1176 ProSiteProfiles PAS repeat profile. 669 739 IPR000014 -
Vimu6g01964 1176 CDD PAS 813 924 IPR000014 -
Vimu6g01964 1176 Gene3D PAS domain 663 800 - -
Vimu6g01964 1176 SUPERFAMILY GAF domain-like 250 450 - -
Vimu6g01964 1176 Pfam PAS fold 121 237 IPR013654 GO:0006355
Vimu6g01964 1176 SMART HKATPase_4 1058 1170 IPR003594 -
Vimu6g01964 1176 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1008 1166 IPR036890 -
Vimu6g01964 1176 MobiDBLite consensus disorder prediction 48 69 - -
Vimu6g01964 1176 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1058 1168 IPR003594 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01964 Vimu-Chr6 17635167 17640229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01964 46 1173 Histidine Kinase Gene Family AT1G09570 75.996 0.0 1805
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01964 K12120 - gmx:100791098 1965.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01964 6 17635167 17640229 Vimu6g01964 6 17635167 17640229 ECH
Vimu6g01964 6 17635167 17640229 Vimu3g01952 3 34461379 34467524 PCT