Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01961 ATGGCGAGAGTTTTCTGGACTGCCATTGCTATAGCACTAGTTTTCAGCAGCTGGGTTGATGGGTTCGAAGGTTATTATGAACATCAATTCAATGAAACAGAGTTGTCTTTATTAGAGGCTCATGAAGCTTCCTTATCCTACGCCGGGAGTAATCTTCTGCTGGTAGGACTCACCCTTGTCCAAAATGCTGCTGCTAAAGGAGCAGTTTGCTTGGATGGAACATTACCCGGTTATCATTTGCACCGGGGATATGGATCAGGAGCAAATAGCTGGCTTATTAATTTAGAGGCTGTAACGGTTTATAGTGATGTTGAAGTGAAAATTGTGTGGCAGGGTGGTGGATGGTGTAATAATATCAGAACATGTGTTTATCGCAAGAAAACCCGGCGTGGATCATCAGATTTCATGGAAAAAGAGATATATTTTACTGGAATATTGAGTAATAAGGCTGAAGAAAATCCAGATTTTTTCAACTGGAATAGAGTAAAGCTTCGTTATTGTGATGGTGCCTCATTTGCTGGGGACAGTGAAGATGAGATTGCTGAACTGCAATTCAGAGGACAACGTATTTGGACAGCTGCCATGGAAGATTTGATGTCAAAGGGAATGCGTTTTGCCGATCAGGCTCTTCTTTCGGGATGCTCCGCGGGTGGCTTAGCTACTATTATTCATTGTGATGAATTTCGTGGTCTCTTTCCAATGACAACCAGAGTCAAATGTCTAAGCGATGCTGGGTTGTTTCTTGATGCGATTGACGTATCTGGCGGCCGTACACTCAGGAACTTATACAGTGGTGTTGTAGGATTGCAGGGAGCGCAGAAGAATCTGCCTCAAATTTGTACTAACCACCTTGATCCCATCTCGTGCTTCTTTCCTCAAAACTTGATTGCCAGTGTTAAGACCCCGCTATTCATTCTTAATGCTGCTTATGATTCATGGCAGATCCAGTCCAGTTTAGCTCCTCCATCTGCAGATCCGCATGGCTATTGGCGTGATTGTAGATTAAATCATGCTAAATGTACTGCACCGCAAATCCAATATCTGCAAGGATTCAGGAATCACATGCTGAATGTTATTAAAGACTTCGCAAGAGCAAACCAGAATGGCTTGTTTATTAACTCATGTTTTTCTCACTGCCAAACTGAGAGACAGGATACATGGTTTGCTGACAATTCTCCTGTTATTAGGAACAAGGCTATTGCTCTGGCTGTTGGAGATTGGTATTTCGATCGAGCAGGTGTTAAGGTTATTGATTGTCCTTACCCTTGTGATAATACGTGCCATCATCTGATTTTCAGATGA 1302 0.4263 MARVFWTAIAIALVFSSWVDGFEGYYEHQFNETELSLLEAHEASLSYAGSNLLLVGLTLVQNAAAKGAVCLDGTLPGYHLHRGYGSGANSWLINLEAVTVYSDVEVKIVWQGGGWCNNIRTCVYRKKTRRGSSDFMEKEIYFTGILSNKAEENPDFFNWNRVKLRYCDGASFAGDSEDEIAELQFRGQRIWTAAMEDLMSKGMRFADQALLSGCSAGGLATIIHCDEFRGLFPMTTRVKCLSDAGLFLDAIDVSGGRTLRNLYSGVVGLQGAQKNLPQICTNHLDPISCFFPQNLIASVKTPLFILNAAYDSWQIQSSLAPPSADPHGYWRDCRLNHAKCTAPQIQYLQGFRNHMLNVIKDFARANQNGLFINSCFSHCQTERQDTWFADNSPVIRNKAIALAVGDWYFDRAGVKVIDCPYPCDNTCHHLIFR 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01961 433 Pfam Pectinacetylesterase 53 412 IPR004963 GO:0016787
Vimu6g01961 433 PANTHER NOTUM-RELATED 41 429 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01961 Vimu-Chr6 17607175 17611020 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01961 1 433 Carbohydrate Esterase AT1G57590 65.297 0.0 596
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01961 K19882 - gmx:100782401 784.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01961 6 17607175 17611020 Vimu3g01936 3 34337119 34349455 ECH
Vimu6g01961 6 17607175 17611020 Vimu6g01961 6 17607175 17611020 ECH
Vimu3g01936 3 34337119 34349455 Vimu6g01961 6 17607175 17611020 ECH
Vimu7g01588 7 14921498 14925662 Vimu6g01961 6 17607175 17611020 ECH
Vimu6g01961 6 17607175 17611020 Vimu3g01957 3 34510944 34515255 PCT