Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01960 ACTTTTGCCGCTTTTAACAAACATTTCAAATCGCACATGGGGAGACACTCTTGCTGCTACAAACAGAAGCTTCGTAAAGGCCTCTGGTCTCCTGAAGAAGACGAGAAGCTTTTGAATTACATCACCAAACATGGCCATGGATGTTGGAGCTCCGTTCCAAAACTCGCTGGCCTTCAGAGGTGTGGCAAGAGCTGCAGATTAAGGTGGATTAATTACCTTAGGCCAGATTTGAAGAGAGGGGCGTTCTCACAGCAGGAAGAGAACTCTATAATTGAACTTCATGCAGTCCTTGGCAACAGGTGGTCGCAGATCGCTGCCCAGTTACCAGGTAGAACCGATAATGAGATAAAGAATCTATGGAATTCCTGTCTGAAGAAGAAGCTTAGGCAAAGAGGCATTGACCCGAACACACACCAACCCCTCTCTGAGGTTGAGAATGACAAGGACAAGCCTCTCACGGCTGACAGAAGCAACCAGAAAGCCTCCAATGAGGTGAGTGTTGTTGAGCCACCAAAACAAAAGCCCATAACTTCTACTACTTCCATGCCAATGGATAGATATCCCCTTGAAGTTTCTGCTACCTCAAAGATCAGCAGTGGTGGCAACAACAGCAGCGGCACCCTAGACAGGTTTGGTACTTGTCATGACAACAACAGTTCCATGACTAGTTCTGATATGATGGGAATGGGATATTTCCCTTTCCAGCACCTGAACTATGGACCAAACATGGGACTCACTACTGCAAACCCCAACAACACCCCACTTTGTTTCATTCCTGGTTCCACATCTTCCCAAATGATGTCAGAGCTGAATTCTACCATGCTCCATTCTGTGTTCTCAACACATGTAAAGCCCACTGTCAGCCTCCAGTCTAATAACAACAACCCATCTTCCATATTTTCTGAAGGGGTTCAGAACTGGGAAGGAAGTGCCTTCAGCAATAACAACAACAACAATGCAAGCAAAAGCAATGGGAGCAGTAGCTGCAGCATCCAATTACAAAGCAGCACTAACTTCCTTGATCATGGCAGCACAATAACATGGGGGCTGCAGGCAGAATCTGCCACCAAGACAGATAATAAAGATGCTAATTCTTCTCATGTGGTACCCTTGCAATCAGAAGCAGAAGACATCAAATGGTCCGAGTATCTGAACAACACCCCTTTTTACCTGGGAAGCACAGTGCAGCAGCATCAAACCACTCACTCTCTCTACAGTGACGAGGTGAAGCCAGAAACAGCCTTCATAGCAGACGAATCAAGTACCAGTTGGCACCACAGCCAGCACTTTCAACCCTCGGATATATATAGCAAAGATCTCCAGAGATTTTCAGTAGCCTTTGGACAATCCCTGTAG 1356 0.4624 TFAAFNKHFKSHMGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENSIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHQPLSEVENDKDKPLTADRSNQKASNEVSVVEPPKQKPITSTTSMPMDRYPLEVSATSKISSGGNNSSGTLDRFGTCHDNNSSMTSSDMMGMGYFPFQHLNYGPNMGLTTANPNNTPLCFIPGSTSSQMMSELNSTMLHSVFSTHVKPTVSLQSNNNNPSSIFSEGVQNWEGSAFSNNNNNNASKSNGSSSCSIQLQSSTNFLDHGSTITWGLQAESATKTDNKDANSSHVVPLQSEAEDIKWSEYLNNTPFYLGSTVQQHQTTHSLYSDEVKPETAFIADESSTSWHHSQHFQPSDIYSKDLQRFSVAFGQSL 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01960 451 PANTHER MYB DOMAIN PROTEIN 55 13 351 - -
Vimu6g01960 451 ProSiteProfiles Myb-like domain profile. 21 73 IPR001005 -
Vimu6g01960 451 Gene3D - 23 79 - -
Vimu6g01960 451 SMART sant 78 126 IPR001005 -
Vimu6g01960 451 SMART sant 25 75 IPR001005 -
Vimu6g01960 451 FunFam MYB transcription factor 80 152 - -
Vimu6g01960 451 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 77 IPR017930 -
Vimu6g01960 451 MobiDBLite consensus disorder prediction 141 155 - -
Vimu6g01960 451 MobiDBLite consensus disorder prediction 131 183 - -
Vimu6g01960 451 ProSiteProfiles Myb-like domain profile. 74 124 IPR001005 -
Vimu6g01960 451 CDD SANT 29 73 IPR001005 -
Vimu6g01960 451 Gene3D - 80 154 - -
Vimu6g01960 451 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 78 128 IPR017930 -
Vimu6g01960 451 MobiDBLite consensus disorder prediction 156 183 - -
Vimu6g01960 451 SUPERFAMILY Homeodomain-like 24 120 IPR009057 -
Vimu6g01960 451 FunFam Myb transcription factor 23 79 - -
Vimu6g01960 451 CDD SANT 81 121 IPR001005 -
Vimu6g01960 451 Pfam Myb-like DNA-binding domain 79 123 IPR001005 -
Vimu6g01960 451 Pfam Myb-like DNA-binding domain 26 73 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01960 Vimu-Chr6 17598400 17600081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01960 13 451 MYB Transcription Factor Family AT1G09540 48.018 1.37e-111 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu6g01960 Myb_DNA-binding 3.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01960 K09422 - gmx:100788976 717.613