Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01959 ATGAACAACAACACTTGTGCAGCTGATCAATCTTATGCATCCAACAACGATTTGTTTGAGCTGGTTTGGGAAAAGGGCCAGATTTCAATGCAGGGTCAATCATTTAGAGCTCGAAAGAGCCCAAAATGTAAAACTTTGCCATCTCATTGCCTACCATCTCACACTCCTCTAGGAGGATATGCTAAGGATAATAATACTACCATCACAAGGATGGGGAAGTGTGGCAGTTTAGGAGCTGAATTGAATGAAATCAAAAGGGTGGTTCCTTCGGGTGAAGTGTATTTTAGTGAAGAAGAAGAAGCTGAAGACATGGTGATGCCATGGTTGAATTATGGAATGGATGACTCTTTGCAACATGGATATAGTTCTGATTTTTTCAATGAACTATCTGGGGTCACCATGAATGAGCCGTCAGCATCAAATGGTTTTTCTTTGTTAGACAGAAGAAATAGTTGTAGAAAGGTATTTAGGGACACTCATAAAAACACTCCATTTGCATCTGTTAGATCCAAGATAGTAGATATAGCTGAAAATAATACAAATAATGTTCCATCTCCCTCAAGTGGTTTTTCTGGCTTAAAGATGGAGAAGCAAGGCTCAGTTGCGTGTGGCAATAGTTCCACCATGATGAATTTTTCCCACTTTGCAAAGCCTGTCGCTATTGTCAAAGCTAACCTTGAGAACATTGGTTTGGCATCAAGATCAGGAAGTGTGGGAATAAAGATAAAAGGTGCTGCTGCAACTGTTGGGACAAATCCTGCTGAATCATCAAAAGTTGAATTATTCGGAGAGTGTCCAAAAAAAGCAGTCACACAAAGTCATCAGGTTACGGAGCCAAAACCTCTTGAGCAGGATGGTGCCGTTTCTACAAAGTGTAATCTTTCTTGCAAAGATGTCTGCAGGATTGATGACACTTCAAACCTAGTCGTTGGAGAAAGTGTGAACAAAGGAAAGGAAGCTGTTGTAAAAAATGTAGAGCCAGCTGTAGTCTCCTCCTCTGTTTGCTCCGGCAATGGCGCAGAGAGGGGTTCTAAGGATCCAAATCAAAATTTGAAGAGAAAAAGTATAGACACCGACGACTTTGAGAGCCAAAGTGAAGATGTTGAGGAAGAATCAGTTGGTGTAGAAAAGGAGGTTCCTGCACCACAAATTGGAGCCAAGAGACACCGTTCAGCTGAAGTGCATAATCTATCTGAAAGGAGAAGAAGAGACAGGATCAATGAGAAGATGCGTGCATTACAAGAACTAGTACCAAATTGCAATAAGACGGATAAAGCTTCGATGTTGGATGAGGCGATAGAGTATCTCAAAACACTTCAACTCCAACTTCAAGTAATGTCAATGGGAACTGGTTTATACATGCCTGCTATGATGTTACCTCCGGGAATACAACACATGCACGCACCACATATGGGTCCTTTTTCTCCTATAGGAATTGGCATGCAAATGAGGTTAAGAGTGGGTTGTGGCATGGGCATGATTGATGGTAATGATGAGACTTCTGGAATTCCAATGGCTCATGTGCCCCAAATGCAAGGAGCAAAACTTCCCATTGCACATGCACCTGGTTCCACTGCCTTACATGGAATGCCAAATGGTCAAGTATTTGGGGTTCTTAGTCAGGGTCACCCCATGCCAATGCCACATGCTCCCATATTTTCATTTCCAGGGGAATCCTTTATGGAACCATCAATTTTAGGACCAAATGCCTGTGGAACACCACTTACGGAAAATGTTGGTTCTGTTTCAGCCTGTAACTTAAAGGATCCAGTGCCACATGTGAACTCACAAGATGCACAAAACACTAACATGCCAAATGTCAACACAAGATTGTAA 1836 0.4199 MNNNTCAADQSYASNNDLFELVWEKGQISMQGQSFRARKSPKCKTLPSHCLPSHTPLGGYAKDNNTTITRMGKCGSLGAELNEIKRVVPSGEVYFSEEEEAEDMVMPWLNYGMDDSLQHGYSSDFFNELSGVTMNEPSASNGFSLLDRRNSCRKVFRDTHKNTPFASVRSKIVDIAENNTNNVPSPSSGFSGLKMEKQGSVACGNSSTMMNFSHFAKPVAIVKANLENIGLASRSGSVGIKIKGAAATVGTNPAESSKVELFGECPKKAVTQSHQVTEPKPLEQDGAVSTKCNLSCKDVCRIDDTSNLVVGESVNKGKEAVVKNVEPAVVSSSVCSGNGAERGSKDPNQNLKRKSIDTDDFESQSEDVEEESVGVEKEVPAPQIGAKRHRSAEVHNLSERRRRDRINEKMRALQELVPNCNKTDKASMLDEAIEYLKTLQLQLQVMSMGTGLYMPAMMLPPGIQHMHAPHMGPFSPIGIGMQMRLRVGCGMGMIDGNDETSGIPMAHVPQMQGAKLPIAHAPGSTALHGMPNGQVFGVLSQGHPMPMPHAPIFSFPGESFMEPSILGPNACGTPLTENVGSVSACNLKDPVPHVNSQDAQNTNMPNVNTRL 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01959 611 MobiDBLite consensus disorder prediction 592 611 - -
Vimu6g01959 611 MobiDBLite consensus disorder prediction 332 403 - -
Vimu6g01959 611 Pfam Helix-loop-helix DNA-binding domain 394 440 IPR011598 GO:0046983
Vimu6g01959 611 Gene3D - 385 448 IPR036638 GO:0046983
Vimu6g01959 611 CDD bHLH_AtPIF_like 390 452 IPR047265 -
Vimu6g01959 611 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 390 439 IPR011598 GO:0046983
Vimu6g01959 611 SMART finulus 396 445 IPR011598 GO:0046983
Vimu6g01959 611 PANTHER TRANSCRIPTION FACTOR PIF3 3 603 IPR044273 GO:0003700|GO:0006355
Vimu6g01959 611 MobiDBLite consensus disorder prediction 346 361 - -
Vimu6g01959 611 FunFam Basic helix-loop-helix transcription factor 385 448 - -
Vimu6g01959 611 MobiDBLite consensus disorder prediction 593 611 - -
Vimu6g01959 611 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 388 451 IPR036638 GO:0046983
Vimu6g01959 611 MobiDBLite consensus disorder prediction 382 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01959 Vimu-Chr6 17584924 17587623 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01959 16 465 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 35.974 4.55e-59 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu6g01959 HLH 5.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01959 K12126 - gmx:102659557 783.867