Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01956 ATGAATATTTTTCAGGCATATCAGGACTCTCTTGTTGAGGATTTGTCAGAAGATTTCCGCTTGCCAATCAACCACAGGCCAACAGAAAATGTTGATCTGGACAACGTAGAGCAAGCATCTCTGGACACACAGTTAACATCATCTAATATTGGATTTAAGCTTCTCCAAAAGATGGGATGGAAAGGGAAGGGTCTTGGGAAGGATGAACAAGGTTTGTACTATATTAGTTTAACAATTTGTTACTCTGTTTATGAATATTTGTACAATGTATTTACCCATCGTCTTAGCATCTGCTGTGCTGCACAATTTTTCCCTTCTCCTTGGTTCATCTTGAATGTCTCCATTTACCCCTCTGAGCACCCATTTATGTACCTCCTTCATAGTGTTGTTAGGACATGCCTTTGA 405 0.3951 MNIFQAYQDSLVEDLSEDFRLPINHRPTENVDLDNVEQASLDTQLTSSNIGFKLLQKMGWKGKGLGKDEQGLYYISLTICYSVYEYLYNVFTHRLSICCAAQFFPSPWFILNVSIYPSEHPFMYLLHSVVRTCL 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01956 134 ProSiteProfiles G-patch domain profile. 47 72 IPR000467 GO:0003676
Vimu6g01956 134 SMART G-patch_5 45 82 IPR000467 GO:0003676
Vimu6g01956 134 Pfam G-patch domain 48 71 IPR000467 GO:0003676
Vimu6g01956 134 PANTHER FINGER DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G04180)-RELATED 5 72 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01956 5 72 C2H2 Transcription Factor Family AT5G26610 70.588 9.58e-31 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01956 - - gmx:100785068 137.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01956 6 17550116 17550520 Vimu6g01956 6 17550116 17550520 ECH