Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01951 ATGGGCGGAGATGGAGCGACGGCCAACGCGGAGGCGCAGTACGCCTCTGCAAAGACATCGGTGTGGTGGGACATCGAAAACTGCCACGTGCCCAAGGGTTCGGATCCGCACGCGATCGCGCAGAACATCAGCTCCGCGCTGGTCCGCATGAATTACCGTGGCCCTGTCTCCATCTCCGCCTACGGAGACACCACGCGCATCCCACCCTCAGTACAACACGCGCTCTCCAGCACTGGAATTTCCCTCCACCACGTCCCTGCCGGCGTGAAAGACGCAAGTGACAAGAAGATTCTTGTTGACATGCTATTCTGGGCAGTGGATAATCCCGCACCCGCAAATTATTTATTAATTTCGGGTGACCGAGACTTCTCAAATGCTCTCCATCAACTTCGGATGAGGAGATATAATATTCTTCTTGCGCAACCTCAGAAGGCATCAGCACCCTTGGTTGCTGCTGCCAAGAGTGTATGGCTTTGGACTAGCCTCTTAGCTGGAGGACCTCCTTTGTCTAATGGTGAATCGCAACAACTTGGTAATGGTAGCCTTAGCCATGTCTCATCTTCTGACTCCTTACAAGTTCCGGTTACAAGTACTGCTCAGATGCAGCAACAAGTAGAATCCTATTCAGAAGTTCATGCAGGCAATTCAAAATTTTCAAATGGAGGCAGGGGATTCGACACTAGGTTTCAGGGTAAACCGAATTGGAGAAGCCCGAGTCAATCAAATGCACCCAGAGCCGTGAATCCACCACAAACTGGACTTCAAGATAATCGTAATAATATAAACTCTTATCGACCTGGCAACTTTAATCCAAATGTTCCACAGAGTGGATCTGCTACAAATTATGTTCACGGCAATACTGATCAGTTATGGAGCAGTAATAGTAATCTACAGGGCAATCATCAAGTTCCTTATTCCCAGCCATTAAGACCAAATAACTTCCCATTGCAGCCTCCTTTTGCACCTAGTAATTCATATACTCCAAATCCCCATACTTTTGCACCTCCAATGGTGCCACCTAGAACTGGTGGTCCCAATTTCAACTCAGGGCCACATACCAACGTGCCAGATATTGGTAATCTAAACATTTCGGGATATCCTAATAGTGTTCATAACCCACCTACTATTCAACAACGGAATGGAGATTTGAAACAAAATCCTAATAGTAGTGCTCCACATCTTTTAAGATCAATTGATGAAAAAAATGGACATGTGGCACATAACAGTGGCACACAACAATTACGCCAAGGTTATCAACATGGTCCAGAATATCAACCAATGCTACCGGCAGCAATGGGTAATAATAATCCTCCTGGTAGTGGTATGTGGGGTTCTCCAGGATGTCCTAAGCCTTCTGAATATGTACAAGGCCTAATAGGGGTTGTTTTACTTGCCTTGAACTCACTGAAAAATGCAAAGATGATGCCAACTGAGGCAAATATAACTGATTGCATCCGGTTTGGAGATCCCAAGCACCGCAACACTGATGTTAAGAAGGCTCTTGAAAGTGCTATTGAGCAGAATATGGTTGTGAAACAGAATTTAGGTGCTTTGCCATTGTATGTTGGTAAGAATGATAAACTATGGAAGTGCGTCAATCCTCTAGGTGGTAATCCTAAGCAGCGCTCAAAAGAAACATGGGATCAAATTGAAAAGTTTTTAACAACTCCTGCTGGAAGATCAGCAATAATGGCTACTTTGTGCAAGTACGAAGCAGGTATTGTGATTAAGAATATGTGCTTCAAAGATCTTGCTTTGGGTGATGTCCTTCAGATATTGAACATGTTAATTACCCATAAAAAATGGATTGCACATAATCCGTCTGGTTGGCAACCACTTAGCATTGCTCTACCTGAGACAATCCCTGATTCAGGGGTTGTGGCTAGAGTATAA 1893 0.449 MGGDGATANAEAQYASAKTSVWWDIENCHVPKGSDPHAIAQNISSALVRMNYRGPVSISAYGDTTRIPPSVQHALSSTGISLHHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSNALHQLRMRRYNILLAQPQKASAPLVAAAKSVWLWTSLLAGGPPLSNGESQQLGNGSLSHVSSSDSLQVPVTSTAQMQQQVESYSEVHAGNSKFSNGGRGFDTRFQGKPNWRSPSQSNAPRAVNPPQTGLQDNRNNINSYRPGNFNPNVPQSGSATNYVHGNTDQLWSSNSNLQGNHQVPYSQPLRPNNFPLQPPFAPSNSYTPNPHTFAPPMVPPRTGGPNFNSGPHTNVPDIGNLNISGYPNSVHNPPTIQQRNGDLKQNPNSSAPHLLRSIDEKNGHVAHNSGTQQLRQGYQHGPEYQPMLPAAMGNNNPPGSGMWGSPGCPKPSEYVQGLIGVVLLALNSLKNAKMMPTEANITDCIRFGDPKHRNTDVKKALESAIEQNMVVKQNLGALPLYVGKNDKLWKCVNPLGGNPKQRSKETWDQIEKFLTTPAGRSAIMATLCKYEAGIVIKNMCFKDLALGDVLQILNMLITHKKWIAHNPSGWQPLSIALPETIPDSGVVARV 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01951 630 Gene3D - 9 161 - -
Vimu6g01951 630 CDD PIN_limkain_b1_N_like 18 142 - -
Vimu6g01951 630 PANTHER LIMKAIN B LKAP 13 510 IPR024768 GO:0005777|GO:0010468
Vimu6g01951 630 MobiDBLite consensus disorder prediction 170 223 - -
Vimu6g01951 630 MobiDBLite consensus disorder prediction 232 267 - -
Vimu6g01951 630 MobiDBLite consensus disorder prediction 416 443 - -
Vimu6g01951 630 MobiDBLite consensus disorder prediction 360 394 - -
Vimu6g01951 630 MobiDBLite consensus disorder prediction 170 267 - -
Vimu6g01951 630 Pfam OST-HTH Associated domain 568 615 IPR025677 -
Vimu6g01951 630 Pfam NYN domain 18 154 IPR021139 GO:0004540
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01951 Vimu-Chr6 17527150 17530157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01951 8 267 C2H2 Transcription Factor Family AT5G61190 57.308 2.86e-84 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01951 - - gmx:100794608 1162.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01951 6 17527150 17530157 Vimu6g01951 6 17527150 17530157 ECH