Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01948 ATGGGGTCTGGTCTTAATGCTGAATTATCCAAGAAAACTCCAATTTTCGGTCTCAAAGTTTGGGAAATAATTGGAATTGTAGTTGGTTTGTCAATAATAGTCATTCTTTCTGTGGTCTCACTTTGCCTCACGTCAAGGAAGAAATCTAGAAAAGAGAAAAACAGGATTCCCCTTAGTCAAATACCAACTGTGTCAAAGGAAATCAAGGAAGTGCGGGTTGAACAAGTGCCAACTAATTCATTTGCTCCTCGCGATGGAATACTTCTTACAATTCGGGACAAGTCCAGTGGCAAGGAATCAGACAATGTCATGGTTCATTTAGGTGTGGGGAAGATGAAGAATGGGAACAGCAACACTCACTCAGATTCATTTCGTTACATAGAGAAAGATGGAAGCGGTTCACACTCACAGTCCGGAGAAGAAGGTAGCTCTGGCACGTTTACCGTGTACAAGCAATCTTCTTCGCACCCTATAACAGCTCCCTCACCTCTATCTGGCCTTCCAGAATTTTCTCACTTAGGTTGGGGTCACTGGTTTACCTTGAGGGATCTTGAGCTTGCCACTAACCGTTTTTCCAAAGAAAATGTCCTGGGTGAAGGAGGGTACGGAGTAGTTTATAAGGGTCAGTTGGTCAATGGAACTCCAGTTGCAGTTAAAAAGATACTCAATAACATCAGTGGTCAAGCAGAGAAAGAATTTAGAGTGGAAGTTGAAGCTATTGGCCATGTCCGACACAAAAACCTGGTTCGCCTTTTGGGGTTCTGCGTTGAGGGAACCCACAGGATGTTGGTTTATGAGTATGTCAATAATGGAAACTTAGAGCAATGGCTTCATGGAGCAATGCGGCACCATGGATACCTTACCTGGGAAGCACGTATGAAGATTCTGCTGGGCACAGCCAAAGCGCTAGCATATTTGCATGAAGCAATTGAGCCAAAGGTGGTACACCGTGATATCAAGTCAAGCAACATATTAATTGATGATGATTTCAATGCCAAGGTTTCTGATTTTGGCCTGGCCAAGTTATTGGGTGCTGGGAAGAGTTATGTCACCACAAGGGTTATGGGAACTTTTGGATACGTGGCTCCTGAATATGCAAATACTGGTCTTCTAAATGAGAAGAGTGATGTTTATAGCTTTGGTGTTTTGCTATTGGAAGGAATTACTGGAAGAGACCCAGTTGACTATGGTCGACCAGCAAATGAAAAGCAGATAATTGGGACATTAAAGAGTGACCCAGTGTACAAGGCTCCACACCTGGTGAAGTTTGTGAAGAAGCTGTTTGCAGGATTTGAAGCAGTGACTTGGGATATACTGGGACATTATGCTTAA 1332 0.4324 MGSGLNAELSKKTPIFGLKVWEIIGIVVGLSIIVILSVVSLCLTSRKKSRKEKNRIPLSQIPTVSKEIKEVRVEQVPTNSFAPRDGILLTIRDKSSGKESDNVMVHLGVGKMKNGNSNTHSDSFRYIEKDGSGSHSQSGEEGSSGTFTVYKQSSSHPITAPSPLSGLPEFSHLGWGHWFTLRDLELATNRFSKENVLGEGGYGVVYKGQLVNGTPVAVKKILNNISGQAEKEFRVEVEAIGHVRHKNLVRLLGFCVEGTHRMLVYEYVNNGNLEQWLHGAMRHHGYLTWEARMKILLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDDFNAKVSDFGLAKLLGAGKSYVTTRVMGTFGYVAPEYANTGLLNEKSDVYSFGVLLLEGITGRDPVDYGRPANEKQIIGTLKSDPVYKAPHLVKFVKKLFAGFEAVTWDILGHYA 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01948 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 314 326 IPR008271 GO:0004672|GO:0006468
Vimu6g01948 443 ProSitePatterns Protein kinases ATP-binding region signature. 197 220 IPR017441 GO:0005524
Vimu6g01948 443 Gene3D Transferase(Phosphotransferase) domain 1 268 433 - -
Vimu6g01948 443 CDD STKc_IRAK 197 403 - -
Vimu6g01948 443 MobiDBLite consensus disorder prediction 130 149 - -
Vimu6g01948 443 ProSiteProfiles Protein kinase domain profile. 191 443 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g01948 443 Gene3D Phosphorylase Kinase; domain 1 172 267 - -
Vimu6g01948 443 FunFam Putative receptor-like protein kinase 173 267 - -
Vimu6g01948 443 Pfam Protein kinase domain 192 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g01948 443 PANTHER OS01G0323000 PROTEIN 5 411 - -
Vimu6g01948 443 FunFam Putative receptor-like serine/threonine-protein kinase 268 419 - -
Vimu6g01948 443 SUPERFAMILY Protein kinase-like (PK-like) 165 415 IPR011009 -
Vimu6g01948 443 SMART serkin_6 191 439 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g01948 443 MobiDBLite consensus disorder prediction 111 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01948 Vimu-Chr6 17501249 17503688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01948 116 406 Trihelix Transcription Factor Family AT1G70460 46.801 7.58e-80 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Vimu6g01948 Pkinase 5.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01948 - - gmx:100787014 724.161