Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01936 ATGGAAACCGTTCTTTTATGCAAAAAATGGCAGAGAGTGAAAGAGAGAAACATGGCTAGCGGTCTCGTTCCCCTCATCTTAATGATTGTTGTGCAGCTAGTCTATGCCGGGATGAATATCACTTCTAAGCTCGCAATAGAATCTGGCATGAGCCCTCTAGTCCTTGTTGCGTATCGACAACTCTTTGCCACCGTGTCCATTGCTCCCTTTGCATATTGGCTCGAATGGAAGACACTTCCCAGGTTGAATAAGCAGCTTATGTTTCGGATATTACTATCGTCCTTGACAGGAGTTACAGGAAATCAGATTCTGTACTTTGTGGGGCTAAAATTTTCAACCGCTACAATTGCATGTGCACTGTCGAATTTGCTCCCAGCTTTCACTTTTATCCTGGCAGTTATCTTCAGACAAGAGAATCTAGGAATCAAGCAGAGGTCTGGCCTGGCAAAGGTATTCGGGACAGTATTGTGTGTGAGTGGAGCGTTGCTTTTGTCATTCTACCATGGAAAAACCATCGGTTTAGGGCAATCTAGTATTCACTGGAGATATGCAGAGAAAATGGAAGGAACTACCACTTCTGGCTCAGGAAACATGTTTGTAGGCCCTTTACTCTTAATTGCTAGCACTCTTGTTTGGGCGCTGTGGTTCGTAATTCAAACAGACATAAGCAAGAAGTTCCCAGCTCCTTACACAAGCACAGGCTTAATGTGTTTCTTGGCAAGCTTTCAATGCATCATTATTGCATTATGTTTCGACCACAGTGTCTCAGCTTGGTCACTCCGCGATGCCATGAGACTTTCCGCTGCTCTTTATGCGGGAGTATTGGCGACCGGGTTGGCGTATTCCCTCATGTCGTGGGCCATTGAGAGAAAAGGTCCACTTTATGTCTCAGTATTTACGCCTTTGCAGCTTGTCCTCACAGCAATCTTAAGCTGGGCTTTGCTGCGGGAGAAACTATATGTTGGAACTGCCATAGGGTCTCTGTTGATAGTCTTGGGGCTCTATAGTGTTCTTTGGGGGAAGAGTGAAGAGGTGAGCACGGAAGACGCCATGAAAGAAGCAGTGAAGGATCCGAAGAATGACACGGAAATGCAATACTATGTGCCATCCAATGGTAATCGTGTCAGTACTTGA 1134 0.455 METVLLCKKWQRVKERNMASGLVPLILMIVVQLVYAGMNITSKLAIESGMSPLVLVAYRQLFATVSIAPFAYWLEWKTLPRLNKQLMFRILLSSLTGVTGNQILYFVGLKFSTATIACALSNLLPAFTFILAVIFRQENLGIKQRSGLAKVFGTVLCVSGALLLSFYHGKTIGLGQSSIHWRYAEKMEGTTTSGSGNMFVGPLLLIASTLVWALWFVIQTDISKKFPAPYTSTGLMCFLASFQCIIIALCFDHSVSAWSLRDAMRLSAALYAGVLATGLAYSLMSWAIERKGPLYVSVFTPLQLVLTAILSWALLREKLYVGTAIGSLLIVLGLYSVLWGKSEEVSTEDAMKEAVKDPKNDTEMQYYVPSNGNRVST 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01936 377 Pfam EamA-like transporter family 24 165 IPR000620 GO:0016020
Vimu6g01936 377 Pfam EamA-like transporter family 201 338 IPR000620 GO:0016020
Vimu6g01936 377 SUPERFAMILY Multidrug resistance efflux transporter EmrE 58 167 - -
Vimu6g01936 377 PANTHER WAT1-RELATED PROTEIN 23 345 IPR030184 GO:0016020|GO:0022857
Vimu6g01936 377 SUPERFAMILY Multidrug resistance efflux transporter EmrE 238 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01936 Vimu-Chr6 17422118 17425198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01936 20 373 Nodulin-like Gene Family AT1G09380 56.474 1.60e-144 413
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01936 - - gmx:100798142 604.364