Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01926 ATGGCGTCTTTCCACCCCAACCTCCATTCTGTTACGTCATCGCAACAATCCAATCACAAGAAGCGCCGCAAACTCGCGCACCACGCTTCCCTCGCCTCCGCTCCCTCTCCATGGACTTCCCAAACCGAACACCGCATCTACGCCACCAATCTCCTCCACGCGCTCCGCCGTAACAGCCCTTCCGCTGCCAGCGATGTCCGCGCAGCAGCCGACCGTGCCCTCGCCGCCACGGCCAAAGGCCGAACTCGCTGGAGCCGCGCGATTCTCGCAAATCCGTTTGGCCGGTGGAAGGGGAGGCACCACATGAAAGCCAGGAAGTCCCGCGCTGGATTGATGAAGAAGAGGACGCCGGAGATTCGGAGAACGGCCCCGCCGCTGCAGAAGAAAGCGCGCTCTCTCGGACGGTTAATCCCTGGTTGTCGGAGGGTGTCGTTCCCGAAGCTTCTAGAAGAAGCCGGTGATTATATTTCTGCCTTGGAGATGCAAGTGCGAGCCATGACGGCTCTCGCCGACCTTCTCGCCGGCGGCCCCTCGCCCCCCGCTCCTCTCCGTTTGAGTTGA 561 0.6185 MASFHPNLHSVTSSQQSNHKKRRKLAHHASLASAPSPWTSQTEHRIYATNLLHALRRNSPSAASDVRAAADRALAATAKGRTRWSRAILANPFGRWKGRHHMKARKSRAGLMKKRTPEIRRTAPPLQKKARSLGRLIPGCRRVSFPKLLEEAGDYISALEMQVRAMTALADLLAGGPSPPAPLRLS 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01926 186 CDD bHLH_AtIBH1_like 120 170 IPR044549 GO:0006355
Vimu6g01926 186 MobiDBLite consensus disorder prediction 1 15 - -
Vimu6g01926 186 MobiDBLite consensus disorder prediction 1 39 - -
Vimu6g01926 186 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 40 173 IPR044660 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01926 Vimu-Chr6 17361297 17363028 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01926 38 183 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06590 40.331 1.32e-29 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01926 - - gmx:100813766 196.052
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01926 6 17361297 17363028 Vimu3g02010 3 34974457 34976226 ECH
Vimu6g01926 6 17361297 17363028 Vimu6g01926 6 17361297 17363028 ECH
Vimu6g01926 6 17361297 17363028 Vimu3g02010 3 34974457 34976226 PCT