Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01923 ATGGAAGCAGTTTACAGGTTGAAACCCCTTTTGCCTTCTGTTGAGGATGTGCTTAGAGTTGGGAACGCTGCCGTTACTACTACTTCTGATATGCGTCTAGGAACGACACCTAATTCTTATCTGCAGCTAGAAGCACCTGAACCCAACGTAACCGACTCAGATATGACGGATCGGATGGTCAAGATCCAGATCGCCGACCACCCTCTTTATCCAGATTTACTCTCTGCATACATTGAATGCCGAAAGGTCGGAGCGCCGCCGGAACTGGCGTGCCTTCTTGAAGAAATAGGCCGAGAAAGCCACCGCATGAATGTTCGCCGCGAGAAAGGGGACGGTCCTGAACTTGACCAGTTCATGGAAACGTACTGCGAAGTGCTTCATAGATACAAGGAGGAGTTGTCCAGGCCCTTCAATGAGGCGACTTTGTTTTTGGGAAACATGGAATCACAACTGAGCAACCTTTGTAATGGAACACTGTCAAAGTCAGCCGATAACAACCGCTCCGATGAAGTAGGTGGTGGGGCATCAGAGGAAGAATTAAGTTGTGGAGAGATGGAAGAAGTTGAAGGTCGTATATCTTCTTCTTTAAGTTGCCCAGGTGATCAAAATCTCAAAGAGATGCTCCTTCGCAAATACAGTGGCCATTTTAGCGCTTTGAGAAAGGAATTTCTAAAACGAAGAAAAAAGGGTAAGCTACCAAAGGATTCAAAGATGGCACTCATGGACTGGTGGAACACCCATCATCGATGGCCATATCCTACGGAGGAGGAGAAAGTGAAGTTATCAGAAGTGACTGGACTGGATCAAAAGCAGATAAATAATTGGTTCATCAATCAGAGAAAAAGGCATTGGAAACCAACTGACGATATGCGATTCGCCGTCATGGATGGGTTAAGTGGCGTTAATGGAGGATCTATGTTCTTTTAG 927 0.4606 MEAVYRLKPLLPSVEDVLRVGNAAVTTTSDMRLGTTPNSYLQLEAPEPNVTDSDMTDRMVKIQIADHPLYPDLLSAYIECRKVGAPPELACLLEEIGRESHRMNVRREKGDGPELDQFMETYCEVLHRYKEELSRPFNEATLFLGNMESQLSNLCNGTLSKSADNNRSDEVGGGASEEELSCGEMEEVEGRISSSLSCPGDQNLKEMLLRKYSGHFSALRKEFLKRRKKGKLPKDSKMALMDWWNTHHRWPYPTEEEKVKLSEVTGLDQKQINNWFINQRKRHWKPTDDMRFAVMDGLSGVNGGSMFF 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01923 308 ProSiteProfiles 'Homeobox' domain profile. 223 286 IPR001356 GO:0003677
Vimu6g01923 308 SMART HOX_1 225 290 IPR001356 GO:0003677
Vimu6g01923 308 Pfam ELK domain 204 224 IPR005539 GO:0003677
Vimu6g01923 308 Pfam Homeobox KN domain 243 282 IPR008422 GO:0003677|GO:0006355
Vimu6g01923 308 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 93 292 - -
Vimu6g01923 308 MobiDBLite consensus disorder prediction 162 182 - -
Vimu6g01923 308 Gene3D - 221 293 - -
Vimu6g01923 308 SMART KNOX2_2 105 156 IPR005541 GO:0003677|GO:0005634
Vimu6g01923 308 ProSiteProfiles ELK domain profile. 203 223 IPR005539 GO:0003677
Vimu6g01923 308 Pfam KNOX2 domain 110 155 IPR005541 GO:0003677|GO:0005634
Vimu6g01923 308 SUPERFAMILY Homeodomain-like 225 295 IPR009057 -
Vimu6g01923 308 ProSitePatterns 'Homeobox' domain signature. 261 284 IPR017970 GO:0000981|GO:0006355
Vimu6g01923 308 CDD homeodomain 226 286 IPR001356 GO:0003677
Vimu6g01923 308 Pfam KNOX1 domain 60 101 IPR005540 GO:0003677|GO:0005634
Vimu6g01923 308 SMART KNOX1_2 58 102 IPR005540 GO:0003677|GO:0005634
Vimu6g01923 308 SMART ELK_2 203 224 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01923 Vimu-Chr6 17314432 17318525 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01923 45 300 Homeobox Transcription Factor Family AT1G23380 52.632 1.97e-85 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vimu6g01923 KNOX2 6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01923 - - gmx:100814830 500.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01923 6 17314432 17318525 Vimu6g01923 6 17314432 17318525 ECH
Vimu6g01923 6 17314432 17318525 Vimu3g02019 3 35066466 35070459 PCT