Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01922 ATGGTTTGCGAGGAAGAATTGCTGATTGAAAAAGTCTGCGGGCTGTATGAACAAATCTCGAGCCTCGAGAGTCTGAAACCTTGCAAAAATGTCGACATGCTTTTCACCCAACTAGTCCTCACATGCATACCTCCTAGCCCAATAGATGTCACAAACCTAAACAAAGACGTGCAAGAGATTAGATCTCAGCTTATAAAACTCTGTGGTGAAGCCGAAGGCCATTTAGAGACCCACTACTCAACCCTCCTAGGTTCATACGACAACCCTCTTCAAAACCTTCATATTTTTCCTTATTATTCAAACTACCTCAAACTTGGTCTCCTTGAGTTCACTATCCTCACCCAACACTGCACCCATGTCCCCAGCAAAATCGCCTTCGTGGGTTCTGGACCCCTCCCTCTCACCTCGATTGTGTTGGCATCAAACCACTTACCTTCCACCACATTTCACAACTATGACATAGACCCTTTAGCCAATTCCAACGCTATGCGCTTGGTTTCCTCTCACCCTGACTTGTCCAACCGCATGCTTTTTCACACCACTGACATATTAGATGTGTCCAACGCTTTGAAGGAGTACGAGGTTGTTTACTTGGCAGCACTTGTGGGCATGGACAAGGAGAGCAAAAACCGCATCATCGATCACTTGGCCAAGCACATGAACCCTGGAGCACTTCTCATGCTAAGGAGCGCTCATGGGGCAAGGGCTTTTCTCTACCCTGTCATTGAGCCTTGCGATCTTCGAGGCTTTGAGGTTCTCACCGTCTTCCACCCCACCGATGAGGTCATCAACTCGGTTCTCATAGCACGTAAATATCCTGTCCCTATCCACTCACTGGATCAAGGCCTTGCTTCCAAGATCCTTCCCAACAAATGTTCCGAAATTCAAGCCTTCAACCCCCTCAACCATGGGAACATGATCGAGGAATTTTCCATTGAGGAACAACTCTAG 951 0.4732 MVCEEELLIEKVCGLYEQISSLESLKPCKNVDMLFTQLVLTCIPPSPIDVTNLNKDVQEIRSQLIKLCGEAEGHLETHYSTLLGSYDNPLQNLHIFPYYSNYLKLGLLEFTILTQHCTHVPSKIAFVGSGPLPLTSIVLASNHLPSTTFHNYDIDPLANSNAMRLVSSHPDLSNRMLFHTTDILDVSNALKEYEVVYLAALVGMDKESKNRIIDHLAKHMNPGALLMLRSAHGARAFLYPVIEPCDLRGFEVLTVFHPTDEVINSVLIARKYPVPIHSLDQGLASKILPNKCSEIQAFNPLNHGNMIEEFSIEEQL 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01922 316 Gene3D Vaccinia Virus protein VP39 7 273 IPR029063 -
Vimu6g01922 316 Pfam Nicotianamine synthase protein 5 273 IPR004298 GO:0030410|GO:0030418
Vimu6g01922 316 PANTHER NICOTIANAMINE SYNTHASE 3 4 297 IPR004298 GO:0030410|GO:0030418
Vimu6g01922 316 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 276 IPR004298 GO:0030410|GO:0030418
Vimu6g01922 316 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 134 233 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01922 Vimu-Chr6 17308180 17311003 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01922 1 314 Nicotianamine Synthase Gene Family AT5G04950 60.312 4.01e-137 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01922 K05953 - gmx:100794250 560.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01922 6 17308180 17311003 Vimu6g01922 6 17308180 17311003 ECH