Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01917 ATGTCGAACACCAGCAACAATGTCGTTGGAGTTGACAACACATTCAGAAGAAAATTTGATCGAGAGGAGTACCTGGAACGAGCACGGGAGCGCGAGAGACAGGAGGAGGAGGGTCGATCGAAACCTAAAGCTAAAGGTCCTCCCGTGCAGAGGAAGCCCTTGAAGCACAGAGATTATGAAGTGGACCTGGAATCTCGCTTGGGCAAGACTCAGGTTGTTACACCGGTTGCACCACTAAGTCAACAGGCTGGATACTACTGCTCTGTTTGTGAGTGTGTAGTTAAGGACTCTGCAAACTACTTGGATCATATTAATGGAAAGAAACATCAAAGAGCTTTGGGCATGTCTATGCGAGTAGAACGTGCTTCTCTCAAACAGGTCCAGGAAAGATTTGAAGTTCTTAAAAAACGGAAAGATGTTGGTAGCTTCACAGAGCAAGATCTTGATGAGCGGATTTTAAAACAACAACAAGAAGAGGAAGAAAAAAAGCGTCTACGAAAAGAAAAGAAAAAAGAAAAGAAGGAGAAGGCAGTGGAAGAACCTGAAATTGATCCGGATGTTGCTGCCATGATGGGGTTTGGAGGTTTCCGGTCATCCAAGAAGTGA 606 0.4488 MSNTSNNVVGVDNTFRRKFDREEYLERARERERQEEEGRSKPKAKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLKQVQERFEVLKKRKDVGSFTEQDLDERILKQQQEEEEKKRLRKEKKKEKKEKAVEEPEIDPDVAAMMGFGGFRSSKK 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01917 201 MobiDBLite consensus disorder prediction 157 201 - -
Vimu6g01917 201 MobiDBLite consensus disorder prediction 20 44 - -
Vimu6g01917 201 Pfam Zinc-finger of C2H2 type 85 109 - -
Vimu6g01917 201 PANTHER ZINC FINGER MATRIN-TYPE PROTEIN 2 1 201 IPR040107 GO:0000398|GO:0005681
Vimu6g01917 201 Coils Coil 148 180 - -
Vimu6g01917 201 SMART ZnF_U1_5 82 116 IPR003604 GO:0003676|GO:0008270
Vimu6g01917 201 MobiDBLite consensus disorder prediction 20 56 - -
Vimu6g01917 201 Gene3D Classic Zinc Finger 79 117 - -
Vimu6g01917 201 MobiDBLite consensus disorder prediction 157 183 - -
Vimu6g01917 201 FunFam zinc finger matrin-type protein 2-like 79 117 - -
Vimu6g01917 201 SUPERFAMILY beta-beta-alpha zinc fingers 80 123 IPR036236 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01917 4 147 C2H2 Transcription Factor Family AT3G05760 81.250 1.06e-84 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu6g01917 zf-C2H2_jaz 1.8e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01917 K12848 - gmx:100527057 321.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01917 6 17280769 17283418 Vimu6g01917 6 17280769 17283418 ECH