Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01913 ATGCTAGTGGATGAATATGGAGCAAGTCCAAGTAACATTCAAAGTGGTGATTTTGACAGCACCCTCTCAATTTGTAGTGATGAAGGATGTGGGAGTAAAGCTCCTGGTTTAGTAGCGAGACTCATGGGTTTGGATTCGTTGCCAGCTTCGGCTGTCACTGAGCCCTCCTGCACCTCACTGTACGGCTCTACATCTCATGGAGTCTCTGACTATAATGAGGGTGCTCTTCATTCAGTGGATGAGTTTTTCCCTGCAGACTACATAAATACACTGCTTAAGCTGGAGAAGTCACAATTGGGTGCCATAGAGTCAAGGGCTAGAAAAGTGGAAAACCTTCCAATAAAGAGATTTCAAACTGAAATGTTACCTCCAAAGTCAGCTAAATCCATTCCAGTTACTCATAATAAACTGCTGTCTCCTATCAAGAGTCCTGGTTTTCTGCCACCAAAAAATGCTGCTCATGTAATGGAAGCAGCGGCTAAGATAATTGAGGCGAGCCCTCAGCCGTATTTGAAGAATAGAATATCTACTGGGTTTTCTTCTGTTCCCTTAAGAATTCTCAATTTGAAAGAGAGATTGGAAGCTGCACAATATACACCAGTGACTGGAAAACCTGCGAATATGAGCAAAACCTATCCTGCAAATGGCAAGCTTAGTGAGAGGAGTAGTAATTTGTCTAAATGCACTTCAGCATTCAAGGGTTCAAGAGGTTCAGAAAAAAATAGTCCTTGCCATTTAGCCAGTAAAGGGAAACCAGTTTCACTTGCAATCCACGCCAAAAACAACGCTCATAGTAGAGATACATTGATTTCAAATGGTGACATGAAATGCATGAGACAGAAAGAGAAGAATGAGATGAAGTCAAATCAGCACTTAAGGAGCCAGAAACCAAGTATGCAAAAAGCCATGCAGCAGAGACCCTACTCAAGTCGGAATGGAAATGTGCTTGGGCAGAATAATCAAAAGCAAAATAGCATGACTGCCAAGGGTAAATCTACTTCAAAAATAGATTCCAATAAGCCAACAACACGAGCGTCACCTTCAGAAACTTTTGGAATAAGGAAGACAACAAACAAGGGTGCTACAAATGCCAATGTTCACCCTAGAAGGTCAAGCATCAGGGCAACTGACATCCAAAAGGAGTTTCCACGATCCAAATCAGTAAGTACTTCCAGAAAGACAAAATATATCAGCAGGGATGTTCATGAGGCTGGAGGTCCTGATAATGCAGTCAATAATTTTGGAAGTAAGTCCATCAAATGCAATTTTACGACTGATGGAAGTTTTGATCAGGATGCATTTAACATGAAAGAAAGCAAGGATGTTATTTCATTTACATTCACATCTCCCTTGAGGAGAAGTATGCCTGAGTCATCTTCCTCCACCGAGCAAGTCAACGGAACCAGAAATATAAAAGATGTAAACTCTCTTGGGCATGGTGATAATTTTCATCCCAAAAAACTGTCATTATCTCCACAAGGAAAACATATGATAGACAGTGATGCTCTAAGTATCCTGTTGGACAAAAAGTTACAGGAATTGACATCCAGAATTAACTTACCTCAGTGTACCTTGGCCGCAGAGGGGAGTTCTTCTGGTTTGGGATATAGCGTGCAAGACAACTTTCCCAGTGCAGCAAGCACCATATCTAAGGAACAAGACAGAAGCCTTTTCCCTGACCTGTTTAGTGATAAACTGGACAGCATTCTTGACTCTCGTCCAAGTGATGATCCCGTGCTTAGCATGAATCAGCAACTGCAGGTATCTCAGGCCGTTATGTTTTGA 1785 0.4179 MLVDEYGASPSNIQSGDFDSTLSICSDEGCGSKAPGLVARLMGLDSLPASAVTEPSCTSLYGSTSHGVSDYNEGALHSVDEFFPADYINTLLKLEKSQLGAIESRARKVENLPIKRFQTEMLPPKSAKSIPVTHNKLLSPIKSPGFLPPKNAAHVMEAAAKIIEASPQPYLKNRISTGFSSVPLRILNLKERLEAAQYTPVTGKPANMSKTYPANGKLSERSSNLSKCTSAFKGSRGSEKNSPCHLASKGKPVSLAIHAKNNAHSRDTLISNGDMKCMRQKEKNEMKSNQHLRSQKPSMQKAMQQRPYSSRNGNVLGQNNQKQNSMTAKGKSTSKIDSNKPTTRASPSETFGIRKTTNKGATNANVHPRRSSIRATDIQKEFPRSKSVSTSRKTKYISRDVHEAGGPDNAVNNFGSKSIKCNFTTDGSFDQDAFNMKESKDVISFTFTSPLRRSMPESSSSTEQVNGTRNIKDVNSLGHGDNFHPKKLSLSPQGKHMIDSDALSILLDKKLQELTSRINLPQCTLAAEGSSSGLGYSVQDNFPSAASTISKEQDRSLFPDLFSDKLDSILDSRPSDDPVLSMNQQLQVSQAVMF 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01913 594 Pfam DUF761-associated sequence motif 26 51 IPR032795 -
Vimu6g01913 594 MobiDBLite consensus disorder prediction 452 475 - -
Vimu6g01913 594 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED 3 573 - -
Vimu6g01913 594 MobiDBLite consensus disorder prediction 283 370 - -
Vimu6g01913 594 MobiDBLite consensus disorder prediction 452 484 - -
Vimu6g01913 594 MobiDBLite consensus disorder prediction 291 370 - -
Vimu6g01913 594 MobiDBLite consensus disorder prediction 229 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01913 Vimu-Chr6 17259353 17261228 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01913 28 557 TRM (TON1 Recruiting Motif) Superfamily AT3G05750 33.816 3.48e-49 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01913 - - gmx:102663635 892.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01913 6 17259353 17261228 Vimu3g02034 3 35226676 35230141 ECH
Vimu6g01913 6 17259353 17261228 Vimu6g01913 6 17259353 17261228 ECH
Vimu6g01913 6 17259353 17261228 Vimu3g02034 3 35226676 35230141 PCT