Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01904 ATGAATAAATTCAGCAAGACTAAAACATGGGACAAAATCATTGAACATGCTAAAGAATGTAAACTAGATCCAGCTGAGCGCTACTTGTATACGTATCGTGCTATGGAACCAGAGAAATCTGTTTCCCTTATCTTGAACTGCATCTATGAGCTTGTGGAGGTCATTATTAACGGGCAGCCTCGTTCTCTGCGATCTCTGGATTCGAAGGAGCAGGTTTGTAATTTTATATCCTATTCTATGTGTTGGTTCCATTGTCTGATACAACTTTCTGCAATGAACTTTACTGCCTATTTCATATTCTTAAGTTTAATGATTCATATATAG 324 0.3704 MNKFSKTKTWDKIIEHAKECKLDPAERYLYTYRAMEPEKSVSLILNCIYELVEVIINGQPRSLRSLDSKEQVCNFISYSMCWFHCLIQLSAMNFTAYFIFLSLMIHI 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01904 107 PANTHER OS02G0177800 PROTEIN 6 74 IPR012416 GO:0005516
Vimu6g01904 107 Pfam Calmodulin binding protein C-terminal domain 29 72 IPR046829 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01904 Vimu-Chr6 17228621 17229307 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01904 8 67 Calmodulin-binding Proteins AT5G26920 41.667 4.65e-08 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01904 - - vun:114187654 120.168