LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu6g01903	ATGTCGCGTCCCAAACTACTCCGCAGTACTCTTAGTTATCCGATGGAATCAAAAAGACAATCCCAAGAGGAGGACAAAAGGGGTGATCAAAAGCGGAGTCGTCAGAATTCACAACTATGGGAAATATTGAGCATTAGAAGGTATCTGCCTCTCATTTGGAATGAGCCCTACTTGGAAGATTTTATTCGAAATACGATCCGAGAGGTGGTTGAACTCCAACTACCAAGACTAACAAGTAGTATTCAGACTGAAATATCTGGAGGCCGCAGATTCTTGAAGCTGGTTTTTAGGAATGAATTGCCTGATACAATTTATACTATGTCCAAGTTGAAAGCTAGAGACAACAATCCTCTTGAGGTCGTTCTTTTCGATACTAAATCTAAGTCTATAGTCTCTGATGAGAATGATCCACTGTCATCGATCAAGGTAGAGATTTGCGCCCTTGATGGTGAGTTTGGTTCAGATGGCAGTGAAAATTGGAGCAAAGATGAATTCAAATCCAAAATCTTACGTCCAAGAAGCAATAAAGGGCAATTACTGAAAGGAGACACGGTTTTTGCGCTTAAAAATGGAGTAGGTTTTATCCACAATCAATTCACTGACAACTCACATTGCATAAGAACAGGACGTTTCAGATTAGGAGCGATGGTTGCGAAATCAAATATGAATGACGCATTAATCATCAAGGAAGGTATAAGTAAACCTTTTAGAGTCAAGGACTACAGAAGTGAGTTGAACAAGAGAATGGATCCAACCCTCAGTGATGAAATATGGCATTTGAAACATATATCAAAAAAAGGGAAAATTTTTGAGCTGCTTTCTAAGAACGGGATACACACTGTTGGCGATTTTTTGAAGGAGCTTGAAACCAATCCATTATCTTTGGAAGAGAAACTCGGCAAGATTCCCTCCAAAAGAAAACGGGAAGAAATTTATAAGCAGGCTAAGAAAGCAAAGCATGCTGAGACTGGTGTTGCTGAAACCATATTATTTGAAGGACAAAATTATCTGTCAGAGAATAATACTTTCTCCGATCAGATGCAAGCATGTCAAAGTTCGAGGGGTCTGATGCAGATTGAACTGATAAATGGTGCTCCAGATCAAGATGTTCAACGGCCAGACTTCCCAATTGCTGAGCAAGAAGAAAGTCTTTGCCGAAGGGGCATAGAAGATTGGTTTGATGAATTATCACAGAATGATGAGTTTGATCTACTCATAAACCCTTTGCTCCCTCCATGTAATAATGATGAAGCAGAACCTGACAGAACCGTAATTTGTATTGATCAAACAAAGGGCAAAGCAAGATGA	1308	0.3968	MSRPKLLRSTLSYPMESKRQSQEEDKRGDQKRSRQNSQLWEILSIRRYLPLIWNEPYLEDFIRNTIREVVELQLPRLTSSIQTEISGGRRFLKLVFRNELPDTIYTMSKLKARDNNPLEVVLFDTKSKSIVSDENDPLSSIKVEICALDGEFGSDGSENWSKDEFKSKILRPRSNKGQLLKGDTVFALKNGVGFIHNQFTDNSHCIRTGRFRLGAMVAKSNMNDALIIKEGISKPFRVKDYRSELNKRMDPTLSDEIWHLKHISKKGKIFELLSKNGIHTVGDFLKELETNPLSLEEKLGKIPSKRKREEIYKQAKKAKHAETGVAETILFEGQNYLSENNTFSDQMQACQSSRGLMQIELINGAPDQDVQRPDFPIAEQEESLCRRGIEDWFDELSQNDEFDLLINPLLPPCNNDEAEPDRTVICIDQTKGKAR	435

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu6g01903	435	PANTHER	OS02G0177800 PROTEIN	35	320	IPR012416	GO:0005516
	Vimu6g01903	435	Pfam	Calmodulin binding protein-like N-terminal domain	92	240	IPR046831	-
	Vimu6g01903	435	MobiDBLite	consensus disorder prediction	18	32	-	-
	Vimu6g01903	435	Pfam	Calmodulin binding protein central domain	253	317	IPR046830	-
	Vimu6g01903	435	MobiDBLite	consensus disorder prediction	1	32	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu6g01903	Vimu-Chr6	17213378	17216403	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu6g01903	58	316	Calmodulin-binding Proteins	AT2G24300	35.556	2.78e-37	141

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu6g01903	-		-	vra:106757518	736.102

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu6g01903	6	17213378	17216403	Vimu6g01903	6	17213378	17216403	ECH