Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01900 ATGTCGTATCGGCCTACAGCAAACACCAGGACCGAGCTTCGTCGGAACCGTTACAAAGTCGCCGTGGACGCTGATGAAGGTCGGCGGCGGCGAGAGGATACCATGGTGGAGATTCGAAAGAACCGTAGGGAGGAGAGCTTGCAGAAGAAGAGACGTGAGGGTCTCCAATCTCAGCAGATTCCTGCGTCAGCTCATTCTACTGCAATAGAAAAGAAGTTGGAACAGCTACCAGCCATGGTTGCAGGTGTTTGGACTAATGACAATAACATGCAGTTTGAGGCCACAACTCAGTTTCGGAAGATGCTTTCAATTGAACGTAGCCCACCCATTGAGGAGGTTATTCAAGCTGGTGTAGTTCCACGGTTTGTTGAGTTTTTAATGAGGGAAGATTTTCCAATGCTGCAGTTTGAGGCAGCTTGGGCTTTGACAAATATAGCTTCTGGAACATCTGAAAATACTAAAGTGGTAATTGATCATGGTGCTGTCCCTATTTTTGTAAAGCTTCTTGGTTCTCCCAGTGATGATGTCCGTGAACAGGCTGTTTGGGCATTAGGAAATGTTGCTGGAGATTCTCCTAGATGTCGAGATCTTGTTCTTAGTCATGGAGCTTTGCTTCCTCTATTGGCACAATTAAATGAGCATGCAAAACTTTCTATGCTAAGAAATGCTACTTGGACACTCTCAAATTTCTGCAGGGGAAAACCACAGCCTCCTTTTGATCAGGTTAAACCTGCACTTCCAGCTCTTGCGAATCTTATCCATTCAAATGACGAAGAAGTCTTGACTGATGCCTGTTGGGCACTTTCTTATCTTTCTGACGGTACAAACGACAAAATTCAGGGTGTAATTGAAACTGGTATTTGTAGCCGGCTTGTTGAGCTTCTAACGCACATTTCCCCCTCAGTGCTTATTCCTGCTCTTCGTACTGTTGGAAATATTGTCACTGGAGATGATTTGCAGACCCAGGTATTAATTCATTAG 981 0.4495 MSYRPTANTRTELRRNRYKVAVDADEGRRRREDTMVEIRKNRREESLQKKRREGLQSQQIPASAHSTAIEKKLEQLPAMVAGVWTNDNNMQFEATTQFRKMLSIERSPPIEEVIQAGVVPRFVEFLMREDFPMLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALANLIHSNDEEVLTDACWALSYLSDGTNDKIQGVIETGICSRLVELLTHISPSVLIPALRTVGNIVTGDDLQTQVLIH 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01900 326 Pfam Armadillo/beta-catenin-like repeat 278 314 IPR000225 GO:0005515
Vimu6g01900 326 Pfam Armadillo/beta-catenin-like repeat 245 272 IPR000225 GO:0005515
Vimu6g01900 326 Pfam Armadillo/beta-catenin-like repeat 149 188 IPR000225 GO:0005515
Vimu6g01900 326 Pfam Armadillo/beta-catenin-like repeat 191 232 IPR000225 GO:0005515
Vimu6g01900 326 Pfam Armadillo/beta-catenin-like repeat 107 147 IPR000225 GO:0005515
Vimu6g01900 326 Gene3D - 9 52 IPR036975 GO:0006606
Vimu6g01900 326 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 117 160 IPR000225 GO:0005515
Vimu6g01900 326 SMART arm_5 106 147 IPR000225 GO:0005515
Vimu6g01900 326 SMART arm_5 275 315 IPR000225 GO:0005515
Vimu6g01900 326 SMART arm_5 149 189 IPR000225 GO:0005515
Vimu6g01900 326 SMART arm_5 190 232 IPR000225 GO:0005515
Vimu6g01900 326 SMART arm_5 234 273 IPR000225 GO:0005515
Vimu6g01900 326 MobiDBLite consensus disorder prediction 39 66 - -
Vimu6g01900 326 Pfam Importin beta binding domain 14 96 IPR002652 GO:0006606|GO:0061608
Vimu6g01900 326 ProSiteProfiles IBB domain profile. 1 60 IPR002652 GO:0006606|GO:0061608
Vimu6g01900 326 SUPERFAMILY ARM repeat 14 325 IPR016024 -
Vimu6g01900 326 FunFam Importin subunit alpha 13 52 - -
Vimu6g01900 326 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 160 202 IPR000225 GO:0005515
Vimu6g01900 326 Gene3D - 74 326 IPR011989 -
Vimu6g01900 326 PANTHER IMPORTIN ALPHA 14 325 - -
Vimu6g01900 326 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 244 286 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01900 Vimu-Chr6 17190157 17196247 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01900 K15042 - gmx:100798125 599.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01900 6 17190157 17196247 Vimu3g02038 3 35273875 35282071 ECH
Vimu3g02038 3 35273875 35282071 Vimu6g01900 6 17190157 17196247 ECH
Vimu10g00136 10 792385 796787 Vimu6g01900 6 17190157 17196247 ECH
Vimu6g01900 6 17190157 17196247 Vimu6g01900 6 17190157 17196247 ECH
Vimu6g01900 6 17190157 17196247 Vimu3g02038 3 35273875 35282071 PCT