Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01899 ATGCGATTCGTTTCGGTATTAGTACGATTGGTAATGATGGATCTGAAGGAATGGTCTTCTCCAGAGCTCAACGAGAGCAAGAAATGCTGCTCCGATTGCAAAACCACCAAGACTCCTCTGTGGAGAGGAGGACCCGCTGGACCTAAGGCCCAACAACACTCATTCCTATTTCATGTACCGGAAGAGAGGGAGTTGTTCCAGGAAGAGAGAGGAGGTGGTGGTGTTACACCGGACATCCTCTGTTGTGAAGAAACAGAGGTGGAAGATGTTGGGAGAAGAGGAACAGGCGGCTGTGTGTTTGATGGCCCTGTCCTGTGGTTTTTTTACCATTCCTTCACTTACCGCATTCCAGTTAACCTAATTACCAGTAATCCACAATCCGACAATCCTTTTTTCATGTCGTATTATACCTAA 414 0.4686 MRFVSVLVRLVMMDLKEWSSPELNESKKCCSDCKTTKTPLWRGGPAGPKAQQHSFLFHVPEERELFQEERGGGGVTPDILCCEETEVEDVGRRGTGGCVFDGPVLWFFYHSFTYRIPVNLITSNPQSDNPFFMSYYT 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01899 137 SMART GATA_3 24 68 IPR000679 GO:0006355|GO:0043565
Vimu6g01899 137 ProSiteProfiles GATA-type zinc finger domain profile. 24 47 IPR000679 GO:0006355|GO:0043565
Vimu6g01899 137 Pfam GATA zinc finger 30 49 IPR000679 GO:0006355|GO:0043565
Vimu6g01899 137 Gene3D - 23 83 IPR013088 GO:0006355|GO:0008270
Vimu6g01899 137 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 26 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01899 Vimu-Chr6 17183502 17184110 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01899 14 50 C2C2-Gata Transcription Factor Family AT5G49300 56.757 1.40e-10 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vimu6g01899 GATA 5.7e-07 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01899 - - vra:106757446 102.449