Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01897 ATGGCAACTGAACCAGCTTTAACATTCTCTTTGGCTTCTGTGGTTGAAGAGGTTCTTCAACAGCATGCTAGTCGTTTAGACGCAAACTCCGCATCCAGAAAAACTGAAGAAACCTCCTTGAGAAGGTATGAAGCAGCTGGTTGGCTACGGAAAACAGTTGGAGTTGTTCGAGGGAAAGACTTGCCAGCTGAGCCTTCTGAAGGAGACTTCAGGATTGGATTGCGTAGTGGGATTATCCTATGTAGTGTTCTTAACAAAATTCAACCCGGAACAGTGAAGGTAGTTGAAAAACCTTGTGATTCTGTTATTATTCCTGATGGAGCAACATCTGCATATCAGTACCAAGAAAATATAAAGAATTTTCTTGTGGCTGTGGAGGAAATGGGGCTTCCTACCTTCGAAGTTTCTGATTTGGAACAGGGAGGAAACTCTGAGAGGGTAGTGGATTGTGTTCTAGAGCTAAAGTCTTATGCCGAACGAAAAGGTGGAGGAAGTGCATCTGGGAAATATAGTGGGGCTGCGAATGCAAAGCCACCTATCTCCGCGAAACGAATTATGAGGAAAAACTCCGAACCATTCATGAAGACTATGAGTCCTTTGCCATCAGGGGATAGAGATGGTGGTTATATGAGTGATCCCGGACAAGATCGAAGCGAAAGGGCTTCTTTTTCCTTAAATTCACTGGTTCGACAATATTTGTCCGACAAAAATCCAGAAGAAATTCTCACTGCTGTGGAATCCTTGCTTAGCAAAGTCATGGAGGAATGTGAACATCACATGCAAATTCGATGTAAAATGGTTTGTGTCTCTCTCTTCTACCGATGTTCAATTTCATACCCCATGGCAAAAAAAAAAGTCACACTTGTTAATTCATGGCAGTATAAAACAACTGGGGAAGATAAAGGACCGTGTGAAACTGAATGTTCAATTTCAGAAGCTGCTTCTATTAATGAAACGATGAAAGAAAAGGAAGATGAACATGCTGTACAAGAAGAGCATGATCTACAAGATAAACATGATGTAAAAGATGAACATGATGTACGAGATGGACATGATGTAAAAGTTGAGCGTGACATTCAAGATGAACACGAGGAACAAAATAAACGAGAGGAAAGTTGTGAAAAGATGTGCAATGAACATGAAAAATCAATCGACAAAAAATCGATTTCGAAGCAGCAAAATATAGTTGCGCAACAAAATAGAAGCATCCAGGAATTGAAAAATATTGTCCATCAAACAAAACTAGGAATGCAATTGATGCAAAGTGAACACCAGAAGGAGATCATTAATCTAAGCAAGCACCTATACAGCCTAACCTGTGCTGCTTCGGGATACCATAAAGTTCTTGAAGAAAACCGCAAGTTATATAATGTAGTGCAAGATCTGAAAGGAAATATTAGGGTATACTGTAGAGTCCGACCTTTCTTGGGTGGTCAACCAAGTCATTATAGCTCTGTCGGTAACGTGGAAGATGGAAGTATCTCAATCATAACACCTTCCAAATACGGTAAAGAGGGGAAGAAGACATTTAATTTCAATAGAGCATTTGGTCCTTCTGCAACCCAAGGAGAAGTTTTTGCCGACACACAACCTCTTATTCGTTCTGTTTTGGACGGTTATAATGTCTGCATATTTGCCTATGGCCAGACGGGATCAGGAAAAACATTCACTATGTCTGGGCCAGATGAACTTAACGATGAGACCATAGGTGTCAACTATCGTGCACTAGGAGACCTTTTCTATCTCTCTGATCAAAGAAAAGGTACAATTTCTTATGAAATCTCTGTTCAGATGCTTGAGATTTACAACGAGCAAGTTAGGGACCTACTTATGCCCGATGACATCCGCAATAGTTCCCTTAATGGCATCAACGTTCCAGATGCTAACCTTGTTCGGGTTTCATGCACTTCTGATGTCATAAGTTTGATGAACTTGGGACATAAGAATCGTGCTGTTGGTTCTACTGCGATGAATGATCGTAGTAGTCGGTCTCACAGTTGTCTTACGGTTCATGTTCAAGGAAAGAACTTGACATCAGGAGGCACAATTCGTGGTTGCATGCATCTGGTTGATCTGGCAGGAAGTGAGAGGGCTGATAAAACTGAGGCTACAGGGGATAGACTCAAGGAGGCTCAACATATCAACAAGTCACTTTCTGCATTGGGAGATGTAATTTCTGCCCTTGCCCAAAAGAGTCCACATGTTCCCTACAGGAATAGCAAACTTACTCAGCTACTTCAAGATTCTCTTGGAGGCCAAGCAAAGACTCTCATGTTTGTTCATATAAGTCCGGAACCCGAAGCTCTTGGAGAAACACTTAGCACACTCAAGTTCGCCGAACGAGTCTCCACTGTTGAACTCGGTGCAGCCCGAGTTAATAAAGACAATTCAGATGTGAAAGAGCTTAAAGAACAGATTGCTAGTTTGAAGACAGCCTTAGCGAGAAAGGAAGGAGAAGCAGAACAGTTAAATAATTGCAACGAAACACCTAAGCATAAATCATATGCATCTTCTCCTCCTATGCATCGGCCTTCCAGTGGTGGATCTCGTAGGCTATCAAAAGAAGATTCTAATGGCCTGGATGATCAGAAAAATGTTGCTTCAACGTTGAAAAGACAAAGCCTAGATCCCCATGAAATGGGTGCCAATTCACCTCAATGGACAACTGTTACAAGTGAAAGAAAGGAGGATGATAAAGAATCAATTTCTGGAGATTGGGGTGATAAGATTTCCATGAACAGAAATGACAGCATAACTAGTGATGATAGTGTTGTGGGAGCGTGGGAAGTAGAAAGCAAACAATCTTCTCCGAGGTTAAGTCTCAATTTTCTCTCAGAGCCTTCTAAAATATCCCTAGACAACTCCTCTCATAAAAAGGACAACCAAGAGAATGAAGATTTACGGAGACCCAGTTTTGATATGACTACCACAGATGAATCAGATGAACACGAGATTGGTACTGTAACTAGTGATTCTTCTGAGTCAGACTTGCATTGGCCACCACAAATACCTAAACCAATCACCATTTCCAGTGGATTAGGCATTAAAGCAAAGAAAAAAGCAAATCTCAGAACAATAAAGAACCCAGACAGCAGGAGTATGATCCCATCATTCATTCCTGCGCCCGTGCCTGTGAATGTGCCTGTGCCTGTACCTGTGCCTGTGCCTGTTCCGGTCTCATCAAGGAAACAACAACCAGTTACTCAAGGAAGAAAGCTCCCAGGCTCTTCTGATGTAAGGAGAAGATTTGGGAACAGTGCCAAGTGA 3267 0.4181 MATEPALTFSLASVVEEVLQQHASRLDANSASRKTEETSLRRYEAAGWLRKTVGVVRGKDLPAEPSEGDFRIGLRSGIILCSVLNKIQPGTVKVVEKPCDSVIIPDGATSAYQYQENIKNFLVAVEEMGLPTFEVSDLEQGGNSERVVDCVLELKSYAERKGGGSASGKYSGAANAKPPISAKRIMRKNSEPFMKTMSPLPSGDRDGGYMSDPGQDRSERASFSLNSLVRQYLSDKNPEEILTAVESLLSKVMEECEHHMQIRCKMVCVSLFYRCSISYPMAKKKVTLVNSWQYKTTGEDKGPCETECSISEAASINETMKEKEDEHAVQEEHDLQDKHDVKDEHDVRDGHDVKVERDIQDEHEEQNKREESCEKMCNEHEKSIDKKSISKQQNIVAQQNRSIQELKNIVHQTKLGMQLMQSEHQKEIINLSKHLYSLTCAASGYHKVLEENRKLYNVVQDLKGNIRVYCRVRPFLGGQPSHYSSVGNVEDGSISIITPSKYGKEGKKTFNFNRAFGPSATQGEVFADTQPLIRSVLDGYNVCIFAYGQTGSGKTFTMSGPDELNDETIGVNYRALGDLFYLSDQRKGTISYEISVQMLEIYNEQVRDLLMPDDIRNSSLNGINVPDANLVRVSCTSDVISLMNLGHKNRAVGSTAMNDRSSRSHSCLTVHVQGKNLTSGGTIRGCMHLVDLAGSERADKTEATGDRLKEAQHINKSLSALGDVISALAQKSPHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPEALGETLSTLKFAERVSTVELGAARVNKDNSDVKELKEQIASLKTALARKEGEAEQLNNCNETPKHKSYASSPPMHRPSSGGSRRLSKEDSNGLDDQKNVASTLKRQSLDPHEMGANSPQWTTVTSERKEDDKESISGDWGDKISMNRNDSITSDDSVVGAWEVESKQSSPRLSLNFLSEPSKISLDNSSHKKDNQENEDLRRPSFDMTTTDESDEHEIGTVTSDSSESDLHWPPQIPKPITISSGLGIKAKKKANLRTIKNPDSRSMIPSFIPAPVPVNVPVPVPVPVPVPVSSRKQQPVTQGRKLPGSSDVRRRFGNSAK 1088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01897 1088 MobiDBLite consensus disorder prediction 819 920 - -
Vimu6g01897 1088 MobiDBLite consensus disorder prediction 952 989 - -
Vimu6g01897 1088 CDD CH_AtKIN14-like 41 156 - -
Vimu6g01897 1088 Gene3D Kinesin motor domain 460 827 IPR036961 -
Vimu6g01897 1088 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 465 820 IPR027417 -
Vimu6g01897 1088 PRINTS Kinesin heavy chain signature 655 672 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vimu6g01897 1088 PRINTS Kinesin heavy chain signature 686 704 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vimu6g01897 1088 PRINTS Kinesin heavy chain signature 539 560 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vimu6g01897 1088 PRINTS Kinesin heavy chain signature 735 756 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vimu6g01897 1088 MobiDBLite consensus disorder prediction 322 391 - -
Vimu6g01897 1088 MobiDBLite consensus disorder prediction 322 388 - -
Vimu6g01897 1088 Coils Coil 389 409 - -
Vimu6g01897 1088 PANTHER KINESIN-LIKE PROTEIN KLP-3 46 957 IPR027640 GO:0003777|GO:0007018
Vimu6g01897 1088 Pfam Sine oculis-binding protein 823 1059 IPR026092 -
Vimu6g01897 1088 MobiDBLite consensus disorder prediction 1056 1088 - -
Vimu6g01897 1088 ProSiteProfiles Calponin homology (CH) domain profile. 39 159 IPR001715 GO:0005515
Vimu6g01897 1088 Coils Coil 792 826 - -
Vimu6g01897 1088 FunFam Kinesin-like protein KIN-14I isoform A 460 827 - -
Vimu6g01897 1088 SMART ch_5 41 157 IPR001715 GO:0005515
Vimu6g01897 1088 ProSiteProfiles Kinesin motor domain profile. 465 785 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vimu6g01897 1088 CDD KISc_C_terminal 463 787 - -
Vimu6g01897 1088 MobiDBLite consensus disorder prediction 823 844 - -
Vimu6g01897 1088 Gene3D - 24 187 IPR036872 -
Vimu6g01897 1088 MobiDBLite consensus disorder prediction 949 1008 - -
Vimu6g01897 1088 MobiDBLite consensus disorder prediction 891 905 - -
Vimu6g01897 1088 MobiDBLite consensus disorder prediction 193 218 - -
Vimu6g01897 1088 SUPERFAMILY Calponin-homology domain, CH-domain 42 165 IPR036872 -
Vimu6g01897 1088 SMART kinesin_4 463 793 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vimu6g01897 1088 Pfam Kinesin motor domain 471 784 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vimu6g01897 1088 Pfam Calponin homology (CH) domain 42 159 IPR001715 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01897 Vimu-Chr6 17165442 17170899 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01897 453 838 Calmodulin-binding Proteins AT5G65930 39.440 6.83e-74 266