Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01896 ATGAGTAGGACTGAATTATCGAGGACGAAGTCATCGCCGGTTCCATTGGGAACTCTGATTGGCCGTGAGATTCGAAATGGAAGAGTTGAAAAACCTTTCGTGAAGTATGGACAAGCTGGATTGGCCAAGAAAGGAGAAGATTACTTTCTGATCAAGACAGATTGCCTCAGGGTTCCGGGGGATGCATCAACGGCGTTTTCTGTCTTTGCGATATTTGATGGGCATAACGGGATATCTGCTGCTATTTTTGCAAAGGAAAGCTTGCTAAGTAATGTTTTGAGTGCAATACCCCAAGATATTAGCAGGGATGCATGGCTTCAGGCCCTTCCACGCGCACTGGTTGTTGGCTTTGTGAAGACTGACATAGAGTTTCAGCAAAAGGGGGAAACTTCCGGAACGACAGCTACATTTGTTTTAGTTGATGGATGGACTATAACTGTCGCATCTGTTGGGGATTCACGCTGCATATTAGATACTCAGGGAGGTGTTGTTTCTCTTTTGACAGTTGATCACAGATTGGAAGAGAATGCGGAGGAAAGGGAGCGTGTGACTGCCAGTGGTGGGGAAGTAGGAAGACTCAATGTATTTGGAGGCAACGAGGTCGGGCCTCTTCGCTGCTGGCCTGGTGGATTGTGCCTATCTAGATCAATTGGTGACACAGACGTTGGGGAATTTATTGTGCCAATACCACATGTTAAGCAAGTGAAGCTTTCAAATGCTGGTGGAAGACTTATTATAGCCTCTGATGGTATTTGGGATGCTTTATCATCTAATATGGCTGCCCAGTCATGTCGGGGTCTGCCTGCAGAGCTTGCTGCAAAACTAGTGGTTAAGGAAGCTCTAAGGTCAAGAGGCCTGAAGGATGATACAACCTGCCTTGTTGTCGATATTATTCCTTCGGACCTTCCTGTATTACCACCAACTCCAAGAAAGAAACATAATATGCTAACTTCGCTTCTCTTTTTTGGGAAAAAGTCTGAGAACACAGTGAACAAAGCTACCAATAAGCTTTCTTCAGTTGGTGTTGTGGAGGAGTTATTTGAAGAGGGTTCTGCAATGCTTACTGAAAGGCTAGGTAAGGATTTTCCGCTTAATAAGAATTCTGGCATTTTCCGCTGTGCGGTTTGCCAAGTGGACCAACCCCCTGGTGATGGCTTGTCGGTGAATTCTGGACCTTTTTTCTCTCCTGCATCGAACCCATGGGAAGGCCCATTCCTCTGCACAAATTGTCGGAAGAAGAAAGATGCCATGGAAGGAAAAAGGCCCAGCAAAACCACCGTTATAGCATAG 1290 0.4581 MSRTELSRTKSSPVPLGTLIGREIRNGRVEKPFVKYGQAGLAKKGEDYFLIKTDCLRVPGDASTAFSVFAIFDGHNGISAAIFAKESLLSNVLSAIPQDISRDAWLQALPRALVVGFVKTDIEFQQKGETSGTTATFVLVDGWTITVASVGDSRCILDTQGGVVSLLTVDHRLEENAEERERVTASGGEVGRLNVFGGNEVGPLRCWPGGLCLSRSIGDTDVGEFIVPIPHVKQVKLSNAGGRLIIASDGIWDALSSNMAAQSCRGLPAELAAKLVVKEALRSRGLKDDTTCLVVDIIPSDLPVLPPTPRKKHNMLTSLLFFGKKSENTVNKATNKLSSVGVVEELFEEGSAMLTERLGKDFPLNKNSGIFRCAVCQVDQPPGDGLSVNSGPFFSPASNPWEGPFLCTNCRKKKDAMEGKRPSKTTVIA 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01896 429 Gene3D - 34 301 IPR036457 -
Vimu6g01896 429 ProSiteProfiles PPM-type phosphatase domain profile. 25 297 IPR001932 -
Vimu6g01896 429 FunFam probable protein phosphatase 2C 5 35 302 - -
Vimu6g01896 429 Pfam Protein phosphatase 2C 63 280 IPR001932 -
Vimu6g01896 429 SMART PP2C_SIG_2 50 297 IPR001932 -
Vimu6g01896 429 PANTHER PROTEIN PHOSPHATASE 46 296 IPR015655 GO:0004722|GO:0006470
Vimu6g01896 429 SMART PP2C_4 23 295 IPR001932 -
Vimu6g01896 429 SUPERFAMILY PP2C-like 38 297 IPR036457 -
Vimu6g01896 429 CDD PP2Cc 43 297 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01896 Vimu-Chr6 17160586 17162877 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01896 1 427 PP2C-type Phosphatase Gene Family AT1G09160 77.283 0.0 657
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01896 - - gmx:100807886 821.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01896 6 17160586 17162877 Vimu6g01896 6 17160586 17162877 ECH