Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01894 ATGCAGATTCCACACCATACACAGGAAAATCACAAAAGGTGTCGTGTGGGGAATCAAGTGGTAGAGTTGATGGGGCATTTTTCCTCGATGTTCAATGGGTTGGCACGGTCGTTTTCAATGAAGAAAGGAAGAAAGAATGAGAAATGCGGAGGGAGGGAAGCTGCCGAAGCAATGGCAAAGGAGGCTAAGAAGAATGACATGATGCTGTGTAGCTCAGGCATAGTTCATGTCGATGGTTCAAACAACTTTGCCTCCGTATTCTCCAAAAGAGGTCAGAAAGGAGTGAACCAAGATTGCTGCATAGTGTGGGAGGAATTTGGATGCCAAGAGGACACGATCTTCTGTGGGATTTTTGATGGGCATGGACCATGGGGTCACTTTGTGGCCAAAAGAGTAAGAGAGTCAATGCCACCATCTTTGCTATGCAACTGGCAGGAGACGCTAGCCCAAACTTCAGATGATCCCGGTGTTGATGTAGAGGAAGGAAAAAGGCAACTTTACCGATTCAACGTATGGAAGCACTCTTACTTGAAGACATGTGCGGCCATTGATGAAGAACTGAAGCAGCACCGCAAGATAGACTCGTTTTACAGCGGAACAACTGCCCTGTCAATTGTTAGACAGGGTGAACTCATTGTCATAGCAAATGTTGGTGATTCTCGTGCTGTGTTGGCTACAACATCAGATGAAGGAAGTTTGGTAGCGGTTCAACTGACAGTTGATTTCAAGCCCAATTTACCCCAAGAAGCAGAGAGAATAATTCAGTGCCAGGGGCGTGTGTTCTGCCTAGAGGACGAGCCAGGGGTGCATAGGGTATGGTTGCCTGATGCAGAGTCTCCAGGACTAGCCATGTCTAGGGCCTTTGGTGACTACTGCATTAAAGGGCATGGCCTAATTTCTGTGCCTGAGGTAACCCACAGAAATATAAGTGGTAGAGACCAGTTTGTTGTGCTAGCCACTGATGGGGTTTGGGATGTAATATCTAACAAAGAAGCAGTGGAAATTGTATCTTCAACAGCAGATAAAGCTAAGTCTGCTAAAAGGTTGGTAGAGTGTGCGGAACATGCATGGAAACGCAAGAGAAGGGGCATTGCCGTGGATGACATTTCAGCCATTTGTCTTTTCTTTCACTCTTCCTTTTAA 1143 0.4628 MQIPHHTQENHKRCRVGNQVVELMGHFSSMFNGLARSFSMKKGRKNEKCGGREAAEAMAKEAKKNDMMLCSSGIVHVDGSNNFASVFSKRGQKGVNQDCCIVWEEFGCQEDTIFCGIFDGHGPWGHFVAKRVRESMPPSLLCNWQETLAQTSDDPGVDVEEGKRQLYRFNVWKHSYLKTCAAIDEELKQHRKIDSFYSGTTALSIVRQGELIVIANVGDSRAVLATTSDEGSLVAVQLTVDFKPNLPQEAERIIQCQGRVFCLEDEPGVHRVWLPDAESPGLAMSRAFGDYCIKGHGLISVPEVTHRNISGRDQFVVLATDGVWDVISNKEAVEIVSSTADKAKSAKRLVECAEHAWKRKRRGIAVDDISAICLFFHSSF 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01894 380 Gene3D - 75 378 IPR036457 -
Vimu6g01894 380 PANTHER PROTEIN PHOSPHATASE 60 374 IPR015655 GO:0004722|GO:0006470
Vimu6g01894 380 FunFam Probable protein phosphatase 2C 34 74 378 - -
Vimu6g01894 380 SMART PP2C_4 74 374 IPR001932 -
Vimu6g01894 380 SUPERFAMILY PP2C-like 79 377 IPR036457 -
Vimu6g01894 380 CDD PP2Cc 82 376 IPR001932 -
Vimu6g01894 380 ProSiteProfiles PPM-type phosphatase domain profile. 83 376 IPR001932 -
Vimu6g01894 380 Pfam Protein phosphatase 2C 98 349 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01894 Vimu-Chr6 17135256 17136939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01894 24 377 PP2C-type Phosphatase Gene Family AT3G05640 73.034 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01894 - - vra:106757085 760.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01894 6 17135256 17136939 Vimu6g01894 6 17135256 17136939 ECH
Vimu6g01894 6 17135256 17136939 Vimu3g02052 3 35423434 35425024 PCT