Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01886 ATGACGGACACAATACCCGCATGTTACAATGTATCTATAGTTAATCCTAATCAATTTTGGAAAACTGACAAAGTCATGAAAATAGAGCTTCCTATTTTGGCCATTCAAATTGTTTTTGTTGTTGGGTTATCTCGTATCTTTTCCATAATCTACAAACCTTTGCATCAAACTCGTCTCATATCGCAAATCGCTGTTGGTTTCCTACTAACACCGCCATTACTTGGAAGATTCCCGCCCATTTTTCAGTTCATTTTTCCGGTAAACGGGATTGTCAACGTCGAGATCCTTTCACACATTGGTCTTATTTATTATGCATTCCTTAGTGGATTAGAGATGAACTTAAATACCATTCTACACGTGAAAAGGAAAGCTGCAAGCATCGCAATTGCTGGGATCATCTTTCCCATGCTCGTTGCACCATGGTTATATGGTTTGTTTCGAAAAGTTTATGGACATATTATGATGTTTCCCCTTGAGGAAAGTACAAATAATACTTATATACTTTGGACTTTAGTTCTCACCGTTACAAGTTTTCCTGTAGTAGCACATACACTTTCTGAGCTTAAGCTCCTCTATACTGGTCTTGGAAAAGCGGCCTTAACAGCATCCATGATTGGTGACACCTATAGTTGGATTCTTTTCACTTTATTTGTTCCATTTTCAATTAATGGTAAAGGAGCTATCTACACTGTGCTATGCACGATAATCTTCGTTGTTGTGTGCATCTTTGTGGTACGTCCAATCATTCAATGGTTTATTGATCGTAAGGCAGACAAAGATGAATGGAATGATAACCAATTGCTCTTTATATTCATGGGCGTTTTAGCTTGTTCATGCATTTCAGATTTTCTCGGTGCACATGCCATTGTTGGGGCTTTTGTTTTTGGACTAATTTTACCTCATGGGAAATTTGCCGAAATGGTCAACTCAATTTCAGATGATTTTATTGCCGGCTTTTTAGTACCCCTATTCTTTACTGGGACTGGGATGAAACTTATGCTATTTACAATTTTCTTCCATGAAAATTGGCTCTTTTTAATTATGATTATATTCTTGTTATGTGCTTTAAAGATTTTAAGCACTTTATTTGTTACTTTATTCTTCGGTATGCGTATTCGAGATGGTTTGACTTTGGGCTTGATTTTGAACAATAAAGGCGCCATGGCATTAATAATGCTGAACATTGCTTGGGATAGAACGATATTTTCTGTACCTACCTATGCCGTTATAACTTCCGCTGTTCTTCTAATGACCATACTTGTGTCTCCCATCATCAATGCCATTTTCAAACCAAGACAGAGATTTGAACAAAACAAGCTAAAGACCATACAAAAACTAAGGGTTGATTCAGAGCTCCGACTTATAACATGTATTCATAATACTCGCCAAGCTGCAAACATGATTAACATAATTGAATGTTTTAATGCCATGAGAGTTTCCCCTGTGCATGTTTTTGCCTTGTACCTTGTTGAACTTACTGGACGTGCTGCTGCCCTAGTTGCTGCACATATAGGGAAGCCTAACAACCAACCTGGAGAACAAAACTTAACTAGGTCTCAAGAAGAGTTAGAAAGCATTCACAATGCATTTGATGCTCTTGGAGAGGCATATGATGCTATTAGAGTTGAGACCTTAAATGTGGTGTCAGCATATGCAACTATTCATGAGGACATATACCACTCAGCAGATGAGAAACGCACAAGCTTAATTCTTCTTCCATTTCACAAACAATTAACTTTAGAAGGTACTTTAGAAGTAACTAATGTTGTATACAAAGATATAAACCAAAATGTAATGCAAGGTGCTCCCTGCTCTGTGGGAATATTTGTTGATCGTGATTTTGGGTCAGTTCTCAAAATGAACCTTCATGTTCGTGTGATCTTTGTTGGTGGTCCTGATGATCGTGAAGCCTTGGCCATTGCATGGAGGATGGCAGGACGTTCAGGAACAAAACTTTCAGTGGTTCGAATACTTCTGTTAGGTGAAGCAGCAGAAGTAGATGCTTCAGTTCACGATGAAGCACAAGAGATATTATCTGCAGTTATAGACACAGATAAGCAAAAAGAGTTAGATGATGAATATATAAACACATTCAGACTTATAGCGGTTAACAGTAACGATTCAATATCCTACTCAGAGATTGATATTCATAGTGGTGAAGATATTCCTGTAATCCTCAATGAGATAGAAAAATTTGGTTGTGATCTTTATGTAGTTGGACAAGGAAATTGTAGGAACTCTAAGGTATTGACAAATTTGCTAGAGTGGTGTGAGTGCTTGGAACTTGGAGTTATAGGGGACATTTTGGTGTCAAATAATTTTGGTTCACGCTCGTCTGTGCTAGTTGTTCAACAATATGGATATGGAGGAATGATTTTTGGAAATAATCTAAACCGCAAGGTCACTAACAAAGGCATGTTTGAGTCTGTTGTTTGA 2436 0.376 MTDTIPACYNVSIVNPNQFWKTDKVMKIELPILAIQIVFVVGLSRIFSIIYKPLHQTRLISQIAVGFLLTPPLLGRFPPIFQFIFPVNGIVNVEILSHIGLIYYAFLSGLEMNLNTILHVKRKAASIAIAGIIFPMLVAPWLYGLFRKVYGHIMMFPLEESTNNTYILWTLVLTVTSFPVVAHTLSELKLLYTGLGKAALTASMIGDTYSWILFTLFVPFSINGKGAIYTVLCTIIFVVVCIFVVRPIIQWFIDRKADKDEWNDNQLLFIFMGVLACSCISDFLGAHAIVGAFVFGLILPHGKFAEMVNSISDDFIAGFLVPLFFTGTGMKLMLFTIFFHENWLFLIMIIFLLCALKILSTLFVTLFFGMRIRDGLTLGLILNNKGAMALIMLNIAWDRTIFSVPTYAVITSAVLLMTILVSPIINAIFKPRQRFEQNKLKTIQKLRVDSELRLITCIHNTRQAANMINIIECFNAMRVSPVHVFALYLVELTGRAAALVAAHIGKPNNQPGEQNLTRSQEELESIHNAFDALGEAYDAIRVETLNVVSAYATIHEDIYHSADEKRTSLILLPFHKQLTLEGTLEVTNVVYKDINQNVMQGAPCSVGIFVDRDFGSVLKMNLHVRVIFVGGPDDREALAIAWRMAGRSGTKLSVVRILLLGEAAEVDASVHDEAQEILSAVIDTDKQKELDDEYINTFRLIAVNSNDSISYSEIDIHSGEDIPVILNEIEKFGCDLYVVGQGNCRNSKVLTNLLEWCECLELGVIGDILVSNNFGSRSSVLVVQQYGYGGMIFGNNLNRKVTNKGMFESVV 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01886 811 CDD USP_Like 630 741 - -
Vimu6g01886 811 Pfam Sodium/hydrogen exchanger family 39 427 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Vimu6g01886 811 Gene3D - 32 439 IPR038770 -
Vimu6g01886 811 Gene3D - 480 750 - -
Vimu6g01886 811 PANTHER CATION/H + ANTIPORTER 8 786 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01886 Vimu-Chr6 17089678 17092313 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01886 2 786 Antiporter Super Family AT2G13620 36.730 0.0 549
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01886 - - gmx:100800072 1262.67