Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01883 ATGCCCTTGGAAGGGATTTTCATTGAACCTACTTCAACTTCTACACCTGATCTTTCCCTTCACATAAGTCCACCGAGCACTTCATCTTCCTCTTCTTTGATTTGCAACAACGGCACATCTGGTGGTGCCACCAATTATGAGGCTCGCAATTCAACCAGCACAAATTTCCCTTCTCAAGCTCACACTGAGCTTTCTTTGGGAAGGAATTTCACTGGTGGAGGAAGAGGGGGTATTGAAGAACCACCACCACACAACAGAAACACCAGCATCAACCCTTATTATCAGACCCAACACCCTCATTTTCATCATCTTCACCACCATTCTAACACTGGGAATGCTTCAAAACCAGCAACAGCGACGACCACCACAACTTCCTCCAATCACTTGAGTCACATAAATTATGGGGTTTCTTCGCTTGATGTGTCATCAGAAGGATTGAGGCCAATCAAGGGGATTCCGGTGTATCACAACCGTTCATTCCCTTTCTTGCCCATGGAACATTCAGGAGACAAGGATCATCACGCCAAAATGTGTTTATATCATCACATGCCTACATATCCCTCTTTGTCCTCTTCTTGTTCTCCTCTGTGTTCTTCTTCTTCTTCTTTTACTTCTTCTCCTGCACCCTACTTTGCCGCAGCGGCAGGTGGCCCGGATCCCATGTCCTATTTGAGCTCAGGTGGGACCACCGTTGCGGCGGCCGCGGCTTATAGGGCTGCCACGGCCACAAGGTTTAATGGAATTTCTGGGGAAGCCTTCAAAAGTCATCATCCATTGCACCACCATCACTCATCGTCACACTACGGGGTTGGACTTGGAGGGTCTCATGAAGCCTCTTCGGGGTTGATGAGATCAAGGTTTTTGCCCAAGTTGCCAACAAAGAGAAGCATGAGAGCACCGAGAATGCGGTGGACAAGCACACTACACGCTCGATTCGTCCATGCTGTGGAGCTTCTTGGTGGCCATGAAAGAGCTACACCAAAGTCAGTTCTAGAGCTCATGGATGTGAAGGATCTCACATTAGCTCATGTCAAAAGCCATTTGCAGATGTATCGAACTGTAAAGACCACTGACAAGCCTGCTGCTTCTTCAGGCCTTTCAGATGGATCAGGAGAAGATGACATGTCTCCAATGGGAAGCAGCGGTGGTATGCGTCAATTTTCAGACCAAAGAAGCCTTTCAGATCGACCGGTGCAACAAGATATTGATTACTCTTCGGCCAATACTCTATGGAGTAACTCTTCAAGCAATAGAGAACCATGGCAACAAAACAGTTCTAACGACATAAATGGTTTCCGACCACCGATCTTCCAGGCACAACAGATATCAGGAGGACATCAAATTCAGGATTGTGATTCAACCCAACTGAAGAACAGCTTGTCAGGATCAGGAAATTTAGAATGCAAGAACCCAAGCTTGGAGTTCACGTTAGGGAGACCAGATTGGAATGGCAAAGGACAAGCCTAA 1467 0.4703 MPLEGIFIEPTSTSTPDLSLHISPPSTSSSSSLICNNGTSGGATNYEARNSTSTNFPSQAHTELSLGRNFTGGGRGGIEEPPPHNRNTSINPYYQTQHPHFHHLHHHSNTGNASKPATATTTTTSSNHLSHINYGVSSLDVSSEGLRPIKGIPVYHNRSFPFLPMEHSGDKDHHAKMCLYHHMPTYPSLSSSCSPLCSSSSSFTSSPAPYFAAAAGGPDPMSYLSSGGTTVAAAAAYRAATATRFNGISGEAFKSHHPLHHHHSSSHYGVGLGGSHEASSGLMRSRFLPKLPTKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAASSGLSDGSGEDDMSPMGSSGGMRQFSDQRSLSDRPVQQDIDYSSANTLWSNSSSNREPWQQNSSNDINGFRPPIFQAQQISGGHQIQDCDSTQLKNSLSGSGNLECKNPSLEFTLGRPDWNGKGQA 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01883 488 MobiDBLite consensus disorder prediction 8 36 - -
Vimu6g01883 488 MobiDBLite consensus disorder prediction 256 277 - -
Vimu6g01883 488 MobiDBLite consensus disorder prediction 381 433 - -
Vimu6g01883 488 NCBIfam myb-like DNA-binding domain, SHAQKYF class 300 353 IPR006447 GO:0003677
Vimu6g01883 488 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 16 485 IPR044847 GO:0000976|GO:0006355|GO:0010158
Vimu6g01883 488 MobiDBLite consensus disorder prediction 65 128 - -
Vimu6g01883 488 MobiDBLite consensus disorder prediction 110 128 - -
Vimu6g01883 488 MobiDBLite consensus disorder prediction 355 433 - -
Vimu6g01883 488 MobiDBLite consensus disorder prediction 1 36 - -
Vimu6g01883 488 SUPERFAMILY Homeodomain-like 297 353 IPR009057 -
Vimu6g01883 488 Gene3D - 299 356 - -
Vimu6g01883 488 FunFam Myb family transcription factor 298 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01883 Vimu-Chr6 17033042 17038054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01883 147 485 G2-like Transcription Factor Family AT5G16560 45.556 2.90e-78 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vimu6g01883 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01883 - - gmx:100813413 699.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01883 6 17033042 17038054 Vimu1g01150 1 8805789 8810579 PCT