Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01877 ATGACTAGAAAGAAGGTGAAGTTGGCATTCATAGTGAATGACTCAGCTAGGAAGGCAACATTCAAGAAGAGGAAGAAGGGTCTGATGAAGAAGGTCAGTGAACTTAGCACCCTCTGTGGAATTGATGCATGTGCTATAGTTTATAGTCCTTATGATCCTCAACCTGAGGTTTGGCCATCCCCAATGGGGGTTCAAAGGGTGCTTGCCAAGTTCAGGAGAATGCCTGAATTGGAGCAAAGCAAGAAGATGGTGAACCAAGAGAGTTTTCTGAGGCAGAGAATCCTAAAGGCCAAAGACCAATTGAAGAAACAAAGGAAGGACAATAGAGAAAAAGAGATGACTCAACTCATGTTTCAGTACCTCAGTGCTGGTAAAATTATGCACAATATAAGCATGGTTGATTTGAATGATCTGGCATGGTTGATTGACCAGAATCTGAAGGACATCAACAGGAGGATTGAGGTGTTGACTAAGAATGCTCAGAGTCAAACCCAAGTTGCAGCACCAGCTGTTACTGATGTTGCTGCCAAGATTGAAGACAAGGGACAAGGGAGTCACAGTGGCCAGGGATTTGATATCAACATGGATCTCATGCAGAAACAGAACTGGTTTATGAACTTGATGAATAATGGTGGTGGTGGGAATGAGACTATGCCTTTTGGAGATGTTAATCACCAAAATGGCTTTTGGCCAAACCCATTTTTCCATTGA 711 0.429 MTRKKVKLAFIVNDSARKATFKKRKKGLMKKVSELSTLCGIDACAIVYSPYDPQPEVWPSPMGVQRVLAKFRRMPELEQSKKMVNQESFLRQRILKAKDQLKKQRKDNREKEMTQLMFQYLSAGKIMHNISMVDLNDLAWLIDQNLKDINRRIEVLTKNAQSQTQVAAPAVTDVAAKIEDKGQGSHSGQGFDINMDLMQKQNWFMNLMNNGGGGNETMPFGDVNHQNGFWPNPFFH 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01877 236 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Vimu6g01877 236 PANTHER MADS BOX PROTEIN 3 138 - -
Vimu6g01877 236 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Vimu6g01877 236 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vimu6g01877 236 Coils Coil 91 114 - -
Vimu6g01877 236 Gene3D - 13 99 IPR036879 GO:0003677|GO:0046983
Vimu6g01877 236 Coils Coil 146 166 - -
Vimu6g01877 236 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vimu6g01877 236 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vimu6g01877 236 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vimu6g01877 236 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Vimu6g01877 236 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01877 Vimu-Chr6 16993958 16997502 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01877 1 177 Type I MADS-box Gene Family AT5G48670 63.277 1.67e-68 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vimu6g01877 SRF-TF 1.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01877 - - gmx:100813231 429.869