Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01865 TTGAGGGATCAATTACAGATTCCAGGTAGACTTTGTTGGCATTTGAGTTTTGGGGAACAGAAAATGGGAAGACAACCTTGCTGTGACAAAGTGGGGTTGAAGAAGGGGCCATGGACTGCAGAGGAGGATAAGAAACTCATCAACTTCATCCTTACCAATGGCCAATGTTGCTGGAGAGCTGTCCCTAAACTAGCAGGGCTATTAAGGTGTGGCAAAAGTTGCAGGCTCAGATGGACAAATTACCTCAGGCCAGACCTCAAGAGAGGCCTTTTATCAGAATATGAAGAGAAAATGGTCATTGATCTCCATGCTCAACTCGGCAATAGGTGGTCTAAGATTGCTTCTCATCTTCCAGGAAGAACTGATAATGAGATCAAGAATCACTGGAACACTCACATAAAGAAAAAGCTCAAGAAAATGGGAATTGATCCTGTTACCCACAAGTCACTTTCCATTACAACTGAGCAAAGCCAACCCAATCCGCCATTGCAAGAACCACAAGATCAGCAACAAGCTATCCAAGTTGAGGAAGACCCAAAATTTGAGCCTGAAAATGGGCAAAACAAGGAGCCAGAGAAGGCAGAGACTTCATTTGATCTATCAACCATCACCGAAGAAGCTAAGGAGGAAGACCAAATCATGATACCCCTTTTTGAATCGATAATGAATGAGTTGTTCACCGATGAAGTTCCCATCATAGAGCCGAGTGAGATATTAGTTCCGTCTGCTACTTCCACTTCACCAACCACTACATCATCTTCGACGTCATCGTCTTCTTATTCAAATTCCCCCAACTTCTTTGAAGACCTGCTGCTCCCAGATTTTGACTGGTCCGATGATTACAATGATACTAAGATTGACAACAACAATAGCAGTGTGGCCTTGTGGGATGATGACTTGATTAGAAGTTGGAATATGCTTATTAATGATGATGGCGATGCTGACAGAAAGCAAGTGTTTGACACTTCTGCTAATCAGTACCCAAGACTCATCATGGATTCAGAATCTTGGCCATATGGGTTGTTTTGA 1029 0.4295 MRDQLQIPGRLCWHLSFGEQKMGRQPCCDKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPVTHKSLSITTEQSQPNPPLQEPQDQQQAIQVEEDPKFEPENGQNKEPEKAETSFDLSTITEEAKEEDQIMIPLFESIMNELFTDEVPIIEPSEILVPSATSTSPTTTSSSTSSSSYSNSPNFFEDLLLPDFDWSDDYNDTKIDNNNSSVALWDDDLIRSWNMLINDDGDADRKQVFDTSANQYPRLIMDSESWPYGLF 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01865 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 137 IPR017930 -
Vimu6g01865 342 MobiDBLite consensus disorder prediction 239 261 - -
Vimu6g01865 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 82 IPR017930 -
Vimu6g01865 342 ProSiteProfiles Myb-like domain profile. 83 133 IPR001005 -
Vimu6g01865 342 Gene3D - 32 88 - -
Vimu6g01865 342 SUPERFAMILY Homeodomain-like 32 129 IPR009057 -
Vimu6g01865 342 Pfam Myb-like DNA-binding domain 35 82 IPR001005 -
Vimu6g01865 342 Pfam Myb-like DNA-binding domain 92 132 IPR001005 -
Vimu6g01865 342 CDD SANT 95 133 IPR001005 -
Vimu6g01865 342 Gene3D - 91 172 - -
Vimu6g01865 342 PANTHER F14D16.11-RELATED 22 288 - -
Vimu6g01865 342 SMART sant 34 84 IPR001005 -
Vimu6g01865 342 SMART sant 87 135 IPR001005 -
Vimu6g01865 342 MobiDBLite consensus disorder prediction 152 200 - -
Vimu6g01865 342 MobiDBLite consensus disorder prediction 152 174 - -
Vimu6g01865 342 FunFam Myb transcription factor 92 154 - -
Vimu6g01865 342 ProSiteProfiles Myb-like domain profile. 30 82 IPR001005 -
Vimu6g01865 342 MobiDBLite consensus disorder prediction 175 196 - -
Vimu6g01865 342 CDD SANT 37 82 IPR001005 -
Vimu6g01865 342 FunFam MYB transcription factor 32 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01865 Vimu-Chr6 16844372 16846310 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01865 22 314 MYB Transcription Factor Family AT1G66230 55.150 5.07e-97 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu6g01865 Myb_DNA-binding 1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01865 K09422 - gmx:100803624 510.76