Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01850 ATGGGTTTATCCCAAGGCCCCTGCACTGATTCCAGGGACCTTTCCAATGACCAAACCTCTTCCCCCTTAGTTGTAGATCACTACTGTGACTACAACAAGCTCAAATTCAGAACCTTGCTCAGAAAAATGATCTGGGAATTCGGTCTTGCCTGTGTCGCCAACCCTTCCCGCCGCCGGAGGGGCTCCGAGAGGGGACTGAGCGATGGCAAGAAGACGAATTTGGAACACAACAAGGCGTGGTTGCTCGCGGAGTCTGGTGGGTGTGGAGCAGAATTGTCCAATGCCGACCCTCAATCGGTTCACTCCTCTTTCAGGTTCAGTTTCTGTTCTCAGGTTGAGTTGGAGTCCCTCAACATGAGTTCTTCCAGTGCTGCGACCGTTTTGATGGTTAATTTGGACAATGGGGTGAGTGAATCTCGCGCCAAGGAAATCAAATGGAGGAGAATGGAGTCCTTGGAGAAGAGCATATCCCCTGTGGCTCACTCCTTGATCAGGTTCTGCTATGGTGAAATTCTCTCTGCTACTAGGAATTTCTCCAAGGGGAGGGTGTTGGGGAGAGGGGCATTAAGCTGTGTTTTTAGGGGGAGAGTTGGCCTTTTGAGGACTGCTGTGGCAATCAAACGGTTGGACAAGGAAGACAAGGAATCTGCCAAGGCCTTCTGCAGAGAATTGATGATTGCTAGTTCTCTTCACAGTTCAAATGTCGTTCCCCTTGTGGGTTTTTGTATTGATCCCGAGGAGGGTCTGTTTCTGGTGTACAAGTATGTCTCAGGGGGCAGTCTGGAGCGCCACTTGCATGGAAGGAAGAAGGGTAGTTCACCTCTTCCTTGGTCTGTGAGGTACAAAGTTGCAGTTGGGATTGCTGAAGCTGTGGCTTATCTGCATAGTGGGACTGAAAGATGTGTTGTGCACAGAGATATTAAGCCCTCAAACATTTTGCTTTCTTCAAGGAAGACACCCAAGCTATGTGATTTCGGATTAGCTACATGGACTTCTGCACCTTCAGTTCCTTTCCTTTGCAAAACCGTCAAAGGAACATTTGGATATTTGGCTCCTGAGTATTTCCAACATGGGAAAGTATCGGATAAGACTGATGTATATGCTTTTGGAGTGGTTTTACTGGAACTCATTACTGGCCGGAAGCCAATTGAGGCAAGAAGACCTTCAGGAGAAGAAAACTTGGTGTTATGGGCCAAACCTTTTCTACAGAAAGGGAAAGGTGCCATTGAGGAGTTGCTTGATCCTCAACTCAAGTGCAGTCTGAGATTCTCAAATCAAATGGGTAGAATGATTGAAGCAGCAGCTGCCTGTGTCACTAATGAAGAATCTCGGAGACCTGGCATACGTGAGATTATTGCAATACTGAAGGGTGAAGAAGAGCCTCTTCTGTCCAGAAGAAAGAAATCCAGTTTTCTTGGAAATGGATGCGTGATTGATTGTTATTCTCAGTTACAACAAACAAATAATGAGATGAAAAGTCACTTGGCTTTAGCTATGCTAGGAGTTGCAGAGTTTGAGGATGATGACTATCTCTATGGTCGATAA 1545 0.466 MGLSQGPCTDSRDLSNDQTSSPLVVDHYCDYNKLKFRTLLRKMIWEFGLACVANPSRRRRGSERGLSDGKKTNLEHNKAWLLAESGGCGAELSNADPQSVHSSFRFSFCSQVELESLNMSSSSAATVLMVNLDNGVSESRAKEIKWRRMESLEKSISPVAHSLIRFCYGEILSATRNFSKGRVLGRGALSCVFRGRVGLLRTAVAIKRLDKEDKESAKAFCRELMIASSLHSSNVVPLVGFCIDPEEGLFLVYKYVSGGSLERHLHGRKKGSSPLPWSVRYKVAVGIAEAVAYLHSGTERCVVHRDIKPSNILLSSRKTPKLCDFGLATWTSAPSVPFLCKTVKGTFGYLAPEYFQHGKVSDKTDVYAFGVVLLELITGRKPIEARRPSGEENLVLWAKPFLQKGKGAIEELLDPQLKCSLRFSNQMGRMIEAAAACVTNEESRRPGIREIIAILKGEEEPLLSRRKKSSFLGNGCVIDCYSQLQQTNNEMKSHLALAMLGVAEFEDDDYLYGR 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01850 514 SUPERFAMILY Protein kinase-like (PK-like) 161 462 IPR011009 -
Vimu6g01850 514 Pfam Protein kinase domain 179 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g01850 514 PANTHER OS08G0249100 PROTEIN 115 472 IPR046958 -
Vimu6g01850 514 Gene3D Phosphorylase Kinase; domain 1 137 255 - -
Vimu6g01850 514 Gene3D Transferase(Phosphotransferase) domain 1 256 469 - -
Vimu6g01850 514 ProSiteProfiles Protein kinase domain profile. 178 463 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g01850 514 FunFam Putative receptor-like serine/threonine-protein kinase 256 471 - -
Vimu6g01850 514 FunFam probable serine/threonine-protein kinase PBL7 139 255 - -
Vimu6g01850 514 ProSitePatterns Serine/Threonine protein kinases active-site signature. 302 314 IPR008271 GO:0004672|GO:0006468
Vimu6g01850 514 SMART serkin_6 178 463 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01850 Vimu-Chr6 16717283 16720055 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01850 164 458 Trihelix Transcription Factor Family AT1G70460 42.761 1.98e-69 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vimu6g01850 Pkinase 5.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01850 - - gmx:100786826 962.214