Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01848 ATGGCACTGGCCAAAGACAAAAACATTCCACATGATTCAACCATGAGCAGCAAGGTTCCAAACTGTGTTTTCAGTGAGGCTGTGGAAACTACCTCAGTGACCGTTCATAGAGTCAATGAGTACCACAAATCAGTTATAGAAGAGGAAGATGGCTCACAAACTACCAATGGCCTCAGCAATGATTCAGGTATAACGCATTCTCCTCCTCTATCCGGCAGTGGCAAAGGGTATACTTATAAGGAGAAAAGTTACCAGCTTGACGAAGAAGAATCATTGATTAATTTCAAAGGGTACAGCAATCTCATGCAAGCTGGTGAATCTTTGCTTAGCTTTCAGCATAACAGGCTGGTCCCTAACAGTTGTTACTCGAAAGATATTAGTCAGAAAGAGTACTGTGTTTGGGAGAATAGTTTGCATCAAGGTCATAACAACTGGAATCAGCATAGTCCAAGAAGTAATAAAGACATGCGCCTGGTGCAGGATTCCAATTGCTTTCAAACTGCTAGTGGCTATAGCTCCATGGTCGACAATGCAAAAGAGAAGCAATATGGCGAACGTTCATCAGGGTGGCTCTACTCAGCACCAACTATCCCTGGTGATAAGAGCCTCCACAAGTTAGGAGCACGAGAGATGGTGCTGCAAAAGCGTCCTTCTATGGGAGAGAGCATGAAAGCTGCAAAGAAGCAATGCTCAACTGAGAGCAAAACTCTAAAACATAAGTCAAGCCCCTCCAAGGATCCTCAAAGTGTGGCTGCCAAGAATCGAAGAGAGAGGATAAGTGAACGACTGAAGATACTACAGGAGCTAGTTCCTAACGGCTCCAAGGTTGATATGGTTACCATGCTGGAGAAAGCAATTAGCTACGTAAAGTTTCTTCAACTTCAAGTGAAAGTGTTGGCAACTGATGAATTTTGGCCAGCGCAAGGTGGAAAACCTCCTGATATTTCTCAAGTAAAGGAAGTCATCGATGCCATTCGTTCATCACAAAGAGAGAGAAGTTTAAACTCAAAGTAG 1014 0.4349 MALAKDKNIPHDSTMSSKVPNCVFSEAVETTSVTVHRVNEYHKSVIEEEDGSQTTNGLSNDSGITHSPPLSGSGKGYTYKEKSYQLDEEESLINFKGYSNLMQAGESLLSFQHNRLVPNSCYSKDISQKEYCVWENSLHQGHNNWNQHSPRSNKDMRLVQDSNCFQTASGYSSMVDNAKEKQYGERSSGWLYSAPTIPGDKSLHKLGAREMVLQKRPSMGESMKAAKKQCSTESKTLKHKSSPSKDPQSVAAKNRRERISERLKILQELVPNGSKVDMVTMLEKAISYVKFLQLQVKVLATDEFWPAQGGKPPDISQVKEVIDAIRSSQRERSLNSK 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01848 337 MobiDBLite consensus disorder prediction 44 78 - -
Vimu6g01848 337 Pfam Helix-loop-helix DNA-binding domain 253 293 IPR011598 GO:0046983
Vimu6g01848 337 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 117 301 IPR045843 GO:0003700|GO:0006355
Vimu6g01848 337 MobiDBLite consensus disorder prediction 50 72 - -
Vimu6g01848 337 Gene3D - 237 300 IPR036638 GO:0046983
Vimu6g01848 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 242 303 IPR036638 GO:0046983
Vimu6g01848 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 243 292 IPR011598 GO:0046983
Vimu6g01848 337 MobiDBLite consensus disorder prediction 218 256 - -
Vimu6g01848 337 FunFam Transcription factor bHLH83 241 300 - -
Vimu6g01848 337 CDD bHLH_AtIND_like 244 306 - -
Vimu6g01848 337 SMART finulus 249 298 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01848 Vimu-Chr6 16698860 16700433 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01848 75 331 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 44.615 1.53e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu6g01848 HLH 7.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01848 - - gmx:100810010 544.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01848 6 16698860 16700433 Vimu6g01848 6 16698860 16700433 ECH
Vimu6g01848 6 16698860 16700433 Vimu1g01075 1 7980510 7981758 PCT