Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01846 ATGGAATACTGTAGAGGGAACAAAATCAATATTGTGGAGGCTGGTGCATTAGAACCGATAGTTAGTTTCCTCAAGTCTCAAAATGTAAATCTGCAGGAGTCTGCAACTGCATCGTTGCTCACACTATCTGCTTCTTCGACCAACAAACCAATTATCAGTGCTTGTGGTGCCATTCCTCTTCTTGTAGAGGTTCTTAGAGATGGAAGCCCCCAAGCTAAAGCTGATGCAGTAATGGCTCTTTCTAATTTATCAACACACCCCACTAATCTCAGTACCATTCTGGAGACAAACCCAATCCCTTTCATAGTTGATCTTCTTAAAACCTGTAAAAAGTCCTCAAAAACAGCTGAAAAATGCTGCGCTTTGATAGAATCCTTGGTGGATTATGACGAGGGCAGAACTGCCCTGACATCTGAGGAAGGCGGGGTTCTGGCAGTTGTGGAAGTTCTAGAAAGTGGCACTCTCCAAAGTAGGGAGCATGCTGTTGGAGCACTGTTGACAATGTGCCAAAGCGATCGATGTAAATACCGGGAACCAATTCTAAGAGAAGGTGTTATTCCAGGACTTCTTGAGCTTACTGTTCAAGGGACACCTAAGTCTCAGTCAAAAGCACGCACCCTTTTGCAGTTACTGCGAGAGTCTCCTTATCCGAGATCTGAAATTCAACCTGATACTCTGGAGAATATAGTGTGCAACATCATATCACAGATTGATGGGGATGATCAATCTGGCAAAGCAAAGAAGATGCTGGCTGAGATGGTTCAAGTAAGCATGGAGCAAAGTCTGAGACATTTACAACAAAGGGCTCTCGTCTGCACCCCAAGTGATCTTCCTATCGCTGGCTGTGCTTCTGAAGTTTCTTCAAAATGA 870 0.4414 MEYCRGNKINIVEAGALEPIVSFLKSQNVNLQESATASLLTLSASSTNKPIISACGAIPLLVEVLRDGSPQAKADAVMALSNLSTHPTNLSTILETNPIPFIVDLLKTCKKSSKTAEKCCALIESLVDYDEGRTALTSEEGGVLAVVEVLESGTLQSREHAVGALLTMCQSDRCKYREPILREGVIPGLLELTVQGTPKSQSKARTLLQLLRESPYPRSEIQPDTLENIVCNIISQIDGDDQSGKAKKMLAEMVQVSMEQSLRHLQQRALVCTPSDLPIAGCASEVSSK 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01846 289 PANTHER U BOX DOMAIN-CONTAINING 6 218 - -
Vimu6g01846 289 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 15 57 IPR000225 GO:0005515
Vimu6g01846 289 SMART arm_5 45 85 IPR000225 GO:0005515
Vimu6g01846 289 SMART arm_5 86 128 IPR000225 GO:0005515
Vimu6g01846 289 SMART arm_5 130 170 IPR000225 GO:0005515
Vimu6g01846 289 SMART arm_5 4 44 IPR000225 GO:0005515
Vimu6g01846 289 Gene3D - 3 125 IPR011989 -
Vimu6g01846 289 SUPERFAMILY ARM repeat 6 198 IPR016024 -
Vimu6g01846 289 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 56 98 IPR000225 GO:0005515
Vimu6g01846 289 FunFam U-box domain-containing protein 4 3 271 - -
Vimu6g01846 289 Gene3D - 126 270 IPR011989 -
Vimu6g01846 289 Pfam Armadillo/beta-catenin-like repeat 48 84 IPR000225 GO:0005515
Vimu6g01846 289 Pfam Armadillo/beta-catenin-like repeat 6 42 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01846 Vimu-Chr6 16679742 16682351 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01846 7 212 U-box Gene Family AT2G23140 34.951 7.83e-34 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01846 - - gmx:100780954 504.982