Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01838 ATGGTTTTTTTAATGAAGCAGAAAGTAGATGTTAGTAGAGTGCTTGCCCGAAGTGAATCATGTTCTGTTTTGACATGGGCAGGTTTGAATTCAAAGGATGGTAGCAAAGAAGAGAATGATCCGAGTGTTTTAAGCGGCACGGTGTCGTCTTCATCTATGCTTCTAACTCCTCAGAATGAGGTTGAGATATTGGAAGCCAGCAATTTGAAGAATTTTGCATTCAATGAGCTAAGAACTGCTACAAGGAACTTTCGTCCAGATAGTATGGTAGGTGAAGGTGGGTTTGGTAGTGTGTTTAAAGGGTGGATTGATGAGCATACACTTGCCCCTACCAAAGCAGGCACAGGAATGGTCATTGCTGTGAAGAGGCTTAACCAAGAAAGCAACCAGGGACACATTGAATGGTTGACAGAAATCAATTACCTGGGGCAGCTCAGTCATCCTAATCTTGTGAAGCTAATTGGTTACTCCTTGGAGGATGATCACCGGATTCTGGTGTATGAGTTTGTGGCCAAGGGTAGCTTGGATAATCACTTGTTTAGGAGGGCCTCTTACATTGAACCGCTCTCTTGGAATATCCGTATGAAGATTGCTCTTGATTCTGCCAAAGGGCTTGCATTTCTTCACAGTGATGAAGTAGATGTAATATTCAGGGACTTCAAAACTTCTAACATCTTACTTGATTCTAATTATAATGCAAAACTGTCTGATTTTGGGTTGGCAAAAAATGGACCAGAAGGTGACAAGAGTCATGTTTCTACAAGGGTGATGGGCACCTTTGGCTACGCTGCTCCTGAGTATATTGCAACAGGTCACTTAACGAAAAGGAGTGACATATACAGTTTTGGAGTTGTTCTTCTGGAACTTATGTCAGGAAAACGTTCACTGGACAACAACAGGCCAAGTGGAGAGCATAATCTAGTTGAATGGGCGAAACCACTTCTGATAAACAAACACAAGATCTCCCAAGTCATGGATGCACGTATAGAAGGCCAATACTCTAAGAGAGAAGCTAAGAGAATAGCTCACCTTGCACTTCAATGCCTCTCTACAGATCAAAAACTTAGACCAAACATAGGTGATGTGGTCAGATCATTGGAACATCTTCAGGATTCCAACGACACACTAATAAATGGTCATAGCTCAAGCAGCAGTGCTACTCCTATTTCTAGTTTGTCTCCTTCTCCTCTTCGTACGTAG 1200 0.4225 MVFLMKQKVDVSRVLARSESCSVLTWAGLNSKDGSKEENDPSVLSGTVSSSSMLLTPQNEVEILEASNLKNFAFNELRTATRNFRPDSMVGEGGFGSVFKGWIDEHTLAPTKAGTGMVIAVKRLNQESNQGHIEWLTEINYLGQLSHPNLVKLIGYSLEDDHRILVYEFVAKGSLDNHLFRRASYIEPLSWNIRMKIALDSAKGLAFLHSDEVDVIFRDFKTSNILLDSNYNAKLSDFGLAKNGPEGDKSHVSTRVMGTFGYAAPEYIATGHLTKRSDIYSFGVVLLELMSGKRSLDNNRPSGEHNLVEWAKPLLINKHKISQVMDARIEGQYSKREAKRIAHLALQCLSTDQKLRPNIGDVVRSLEHLQDSNDTLINGHSSSSSATPISSLSPSPLRT 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01838 399 Pfam Protein tyrosine and serine/threonine kinase 88 366 IPR001245 GO:0004672|GO:0006468
Vimu6g01838 399 FunFam Serine/threonine-protein kinase BIK1 50 169 - -
Vimu6g01838 399 FunFam Serine/threonine-protein kinase PBS1 170 384 - -
Vimu6g01838 399 CDD STKc_IRAK 90 369 - -
Vimu6g01838 399 PANTHER OS01G0588500 PROTEIN-RELATED 50 370 - -
Vimu6g01838 399 ProSiteProfiles Protein kinase domain profile. 84 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g01838 399 ProSitePatterns Protein kinases ATP-binding region signature. 90 122 IPR017441 GO:0005524
Vimu6g01838 399 SUPERFAMILY Protein kinase-like (PK-like) 61 374 IPR011009 -
Vimu6g01838 399 Gene3D Transferase(Phosphotransferase) domain 1 170 386 - -
Vimu6g01838 399 MobiDBLite consensus disorder prediction 374 399 - -
Vimu6g01838 399 Gene3D Phosphorylase Kinase; domain 1 58 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01838 Vimu-Chr6 16612670 16614397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01838 70 378 Glycoside Hydrolase AT3G07070 46.774 1.57e-98 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vimu6g01838 PK_Tyr_Ser-Thr 1.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01838 - - var:108326804 683.715