Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01831 ATGCCATTCATCTCCAAAATTCAGCGCCAATCTGATTACACCCTCTTCAGCTCCGCCACTCCCATCGTCATCGACAATGGTGCCTCCTATTTCCGTATTGGATGGGCTGGAGAGACTCAACCTCGTGTTGTTTTCCGCAGCATTGTCCAACGGCCACGCCACAAAGCCACTGGAGAAATTGTCACTATTGTTGGTGACCATGATCCAGCATTAATGAAATACTTTGACTGTAGTCGCACTGGACCCCGCTCAGCGTTTGACAGCAATGTAGTTTACCAATTTGAAATGATGGAATATATTTTGGACTTTGGATTTGATCGGTTGGGAGCAACAGGATCAGAGATTGATCATCCTGTCCTGATCACTGAATGTGTATGCAACCCAATTCAGTCTCGTAGTAAAATGGCAGAACTTCTTTTTGAGACATATGGAGTTCCATCTATAGCCTTTGGTGTTGATGCGGCATTCAGCTACAAATATAATCAACAACATGGTGTTTGTAATAAAGATGGCCTTGCTTTGTGTCCTGGATTTAATACGACTCATGTGATTCCGTTTGTAGATGGGGAGCCTATATATAAAGGATGTTGCCGAACCAATGTTGGTGGGTTCCATGTGACTGATTATTTAAAACAACTTCTTTCACTTAAATATCCTTATCATATGGCTAGATTTACATGGGAAAAGGTTGACGACCTGAAGATGGAACATTGTTATATTGCGCCAGATTATGCTTCTGAAGCTCGACTGTTTCAGAAAAAATCTAAGGAGGCTAAAGAAAAAACCAGATGTTGGCAGCTCCCTTGGGTTCCACCCCCTAGGGAGGAGCCTCCTTCTGAAGAAGAGATTGCTAGAAAGGCAGCAATAAGAGAGAGACAGGGTCAAAGATTACGTGAAATGGCTGAGGCAAAGAGGTCCTCTAGAATAAACGAATTGGAAAATGAATTGCATGGTTTGGAATTTCTTCTAAAACAGCTTGAACAAGTTGAAGACAGTGATATTCCATCTTTCCTAGCAGAGACCGGTTATGTCTCTAGGCAGGAGATAGAATCTGCCCGCATTAAAGTTACTCAATCTTTACGTAAAGCAAAAGGTGAACCAAAGAGTGAACAAGCTGAAACCGAAAAAGCTGACTCTGGCATTAATGAAAAGTATTCTCTTATAAACATCCCTGATGACATGCTCTCCCCTGAACAGCTAGTTGAAAAAAAGAAACAGCTGTTACTCAAATCCATGTCAGATGGACGACAGCGAATGAAGCAGAAGCGTTATGAAGAGGAATTGGAGCGAGAAAGGAAACAACAGTTAGAGGAGGAAAAACGCCTAGAGAACCCAGAGCTTTACTTGGAACAATTGCGTGCCAAGTACAAAGACCTTTCAGAGAAAGTTGACCAGAGAAAACGGCTCAAGACAAACGGAGATCATTCTAATGGAAATAACTTGTCCGGTGGCATTGGTCGTGGTGAGAGACTCAGTGCTGCTCAGAGGGAGAGAATGCGGCTCTTAACAACTGCTGCATTTGATCGCGGTAAAGGTGAAGATACATTTGGTGCCAAAGATGAAGATTGGCAACTTTACAAATTAATGAGTAAAGATAATGATGATGGTGACGAGGGACCAGATGAGGATGACACTGAGCTAGCACGCATCTCTTCCAAGCTGCAGGACTTGGATCCAACATTCGTGCCGAAGCCAGAAACTGGTAGCTCTCAACCTGCTGAGGCGTCACGTGTTCGTCCTTTAACCAAAGAAGATTTTCAAATTGTTTTGGGTGTGGAAAGGTTCCGATGCCCTGAAATTTTGTTCAATCCAAACAGGATCGCAGTTGATCAAGCAGGGCTAGATGAGATGGCTGGGGTGTCAATAAGAAGGTTATCGTGTAAGGATGAAGAGCTGGAAAAGAGACTGACAAACTCCATACTTGTGACTGGTGGAAGTTCTATTTTCCCGGGCATGATTGAACGGCTTGAAGCCGGAATTAGGATGATTCGACCATGTGGATCACCCATTAAGGTTGTGAGAGCATTGGATCCTATTATGGATGCATGGCGTGGTGCTGCTGCATATGCAACAATCCCACAATTCCATACTCAAACCTTCAGTAGGATGGACTATTTTGAAAAGGGTGAAGACTGGCTCCGCAGTTATCAACTCAAATATTCATTGTAA 2169 0.4334 MPFISKIQRQSDYTLFSSATPIVIDNGASYFRIGWAGETQPRVVFRSIVQRPRHKATGEIVTIVGDHDPALMKYFDCSRTGPRSAFDSNVVYQFEMMEYILDFGFDRLGATGSEIDHPVLITECVCNPIQSRSKMAELLFETYGVPSIAFGVDAAFSYKYNQQHGVCNKDGLALCPGFNTTHVIPFVDGEPIYKGCCRTNVGGFHVTDYLKQLLSLKYPYHMARFTWEKVDDLKMEHCYIAPDYASEARLFQKKSKEAKEKTRCWQLPWVPPPREEPPSEEEIARKAAIRERQGQRLREMAEAKRSSRINELENELHGLEFLLKQLEQVEDSDIPSFLAETGYVSRQEIESARIKVTQSLRKAKGEPKSEQAETEKADSGINEKYSLINIPDDMLSPEQLVEKKKQLLLKSMSDGRQRMKQKRYEEELERERKQQLEEEKRLENPELYLEQLRAKYKDLSEKVDQRKRLKTNGDHSNGNNLSGGIGRGERLSAAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSKDNDDGDEGPDEDDTELARISSKLQDLDPTFVPKPETGSSQPAEASRVRPLTKEDFQIVLGVERFRCPEILFNPNRIAVDQAGLDEMAGVSIRRLSCKDEELEKRLTNSILVTGGSSIFPGMIERLEAGIRMIRPCGSPIKVVRALDPIMDAWRGAAAYATIPQFHTQTFSRMDYFEKGEDWLRSYQLKYSL 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01831 722 Coils Coil 418 445 - -
Vimu6g01831 722 SUPERFAMILY Actin-like ATPase domain 19 159 IPR043129 -
Vimu6g01831 722 FunFam Putative actin-related protein 5 682 710 - -
Vimu6g01831 722 SMART actin_3 19 718 IPR004000 -
Vimu6g01831 722 FunFam Actin-related protein 5 203 257 - -
Vimu6g01831 722 Gene3D - 588 677 - -
Vimu6g01831 722 MobiDBLite consensus disorder prediction 552 578 - -
Vimu6g01831 722 FunFam Actin-related protein 5 171 202 - -
Vimu6g01831 722 Gene3D Actin; Chain A, domain 4 203 288 - -
Vimu6g01831 722 Coils Coil 449 469 - -
Vimu6g01831 722 MobiDBLite consensus disorder prediction 466 488 - -
Vimu6g01831 722 CDD NBD_sugar-kinase_HSP70_actin 22 202 - -
Vimu6g01831 722 SUPERFAMILY Actin-like ATPase domain 170 715 IPR043129 -
Vimu6g01831 722 Gene3D - 18 170 - -
Vimu6g01831 722 FunFam Actin-related protein 5 18 170 - -
Vimu6g01831 722 Coils Coil 309 329 - -
Vimu6g01831 722 FunFam ARP5 actin-related protein 5 homolog 612 681 - -
Vimu6g01831 722 Pfam Actin 587 714 IPR004000 -
Vimu6g01831 722 Pfam Actin 19 370 IPR004000 -
Vimu6g01831 722 PANTHER ACTIN 21 710 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01831 Vimu-Chr6 16558359 16563370 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01831 588 709 Miscellaneous Gene Families AT2G42100 32.787 1.69e-15 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01831 K11672 - gmx:100808396 1281.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01831 6 16558359 16563370 Vimu6g01831 6 16558359 16563370 ECH
Vimu6g01831 6 16558359 16563370 Vimu1g01041 1 7749898 7755810 PCT