Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01830 ATGGTTTTCACTTTGAGAAACAGAGTGCTATGCTTCATCATCATCATCATCATCATCACTTTTACATGTTTTTTGCAACTTGCAAAGCCTTCAAACTTGAGGGAAGACACGCTGCTCCAAGGCCATCCCCTTGCAGCAACCGACCGTTTGATTTCGCCTTCATCTTTATACACACTGCGTTTCTTTCAGCTTGATGATGGGTCTGAAGCTAACACCAAATTCTACCTTGGCATATCAGCCAATAAGTACTATTACTATGTTTGGCTTGCCAACAGGGACAATCCAATCCACGATGACCCCGGAGTTCTCACCATTGACGAATATGGCAACCTCAAAATTGTGTCAAGTACTACCACTATGATGCTATATTCAGTTGAAGCAGAAAGTAACAAAAGTGTTAGAGCCTCTTTGCTAGATACAGGAAACTTTGTGCTTCATGAATTGAACTTAGATGGATCTGTGAAAAGGGTGTTATGGCAGAGCTTTGATTACCCCACAGACACTATTTTACCAGGGATGAAGCTTGGTTATGACAAGCACAGTGGCCACAAGTGGTCTCTAACAGCAAGGAGAAGTTACAAAACTCTTTGGTCAGGGTCTTTCTCTTTCAGCCTTGACCCCAAAATTAACCAATTGATTACTAGATGGAGAGGGGACATTATTTGGGCCAGTGGAGAGTGGAGAAATGGAAGTTTTAGCAACCTGAAATCTTCATCACTTGACAGAGAGAACTTCAACTTCACTTTCTTTTCAAACGAAAGTGTGACTTACTTTGAATATTCTCCAGTTTCTGGTTATCTCATCATGGGACCATTGGGTATAATCAATGCTACTGGTGTCTCTTACTCCTGTGTTGGCAGTGAGATTGTGCCTGGTTGTACAATGCCGCAGCCTCCCAAATGTAGGGAAGATGATTTGTACTTGCCAAGTTGGAATAGTTTTGGAGCAATGTCAAGAAAAGGATACATATTTGATGAAAGAGAGAACATGACCATTTCTGATTGCTGGATGAGGTGTTTGAAAAATTGCTCCTGTGAGGCTTACACTTATGCATTCAAGGATGCAACTGGCTGTGAAATATGGAGCAGATACACATCACACTTTGTTGAGTCTAATTCCGGTGTTGGCCGTCCAATTTTCTTCTTTCTCAGCGAAACCAAAGCCAAAGGCAAGAAGAGGAGAATATGGATTGCTTGTTCTGCGGTTGGAGTTCTTCTCCTCATACTCTCATTCACTGCATCCTTTATCATAACAAATGTATTCTCTGACATTGGAGAAAATACTGAAATTTCTGATGCATACGATGAAGGAAGAGAAGAATGGAATGAGAAGAGGACAGGCAGTGATACACATAAATTCGACTTTATAACCATTCTTCAGGCAACGGACAATTTCTCTTTGGCGAATAAGATTGGAGAGGGTGGTTTTGGACCTGTTTACAAGGGGAAGTTGGCAAATGGTGAAGAAATAGCTATAAAGAGACTTTCAAAAAGGTCGGGACAAGGATTGGTAGAGTTCAGAAATGAAGCTATGCTGATTGTTAAACTGCAGCACACTAACCTAGTGAGGCTTTTAGGATTTTGCATTGACAGAGAAGAAAGGATATTAGTCTATGAATACATGGCCAACAAAAAATATGCTCTGAGTGGAGTTATCTCAACAAAAACTGATGTATACAGCTTTGGCGTATTACTCTTAGAGATTGTGACTGGAAAGAAAAACATCAGTGACGATTTTTCACTGAATCTGATAGGATATGCATGGCAATTATGGAATGAAGGAGAAGCTCTAAAGCTGATTGACAGAATGGTGAATGGTTCATGCCATCAGATACAAGTTATACGATGCATTCATATAGGTTTGTTGTGCACTCAAGATAAAGCAAAGGATAGACCGAGTATGCTTGAGACATACCTACTGAGCTTTGCAGGTGTTAAGGGGTTTTGCAGTACTGCAAATTCCATAAAGGCCAATGGCATCATTATCTATGCTGTCTCAATCAACGAATGGTCTGAACTGCACTTGATTCAAGATTTCCACAAAAAACCTCAATCGAACAGTTGCGTAGTGGTGAGATCCTCGAACAATAGCCGGTGTAATATAAGGGACCACCTCAAACAAATTAATGGCCCTAAAAAGCTTGTGAATCTTGATGATGCTCCACCGGCAAACACAGGCAATGAAATAGAAAACTTGAAAAAGAAAAAAAAGGAGTCGGAAAATGAGGAATACGAGGAAGTAGAAAAGGAGGAGAGAATATAG 2262 0.4054 MVFTLRNRVLCFIIIIIIITFTCFLQLAKPSNLREDTLLQGHPLAATDRLISPSSLYTLRFFQLDDGSEANTKFYLGISANKYYYYVWLANRDNPIHDDPGVLTIDEYGNLKIVSSTTTMMLYSVEAESNKSVRASLLDTGNFVLHELNLDGSVKRVLWQSFDYPTDTILPGMKLGYDKHSGHKWSLTARRSYKTLWSGSFSFSLDPKINQLITRWRGDIIWASGEWRNGSFSNLKSSSLDRENFNFTFFSNESVTYFEYSPVSGYLIMGPLGIINATGVSYSCVGSEIVPGCTMPQPPKCREDDLYLPSWNSFGAMSRKGYIFDERENMTISDCWMRCLKNCSCEAYTYAFKDATGCEIWSRYTSHFVESNSGVGRPIFFFLSETKAKGKKRRIWIACSAVGVLLLILSFTASFIITNVFSDIGENTEISDAYDEGREEWNEKRTGSDTHKFDFITILQATDNFSLANKIGEGGFGPVYKGKLANGEEIAIKRLSKRSGQGLVEFRNEAMLIVKLQHTNLVRLLGFCIDREERILVYEYMANKKYALSGVISTKTDVYSFGVLLLEIVTGKKNISDDFSLNLIGYAWQLWNEGEALKLIDRMVNGSCHQIQVIRCIHIGLLCTQDKAKDRPSMLETYLLSFAGVKGFCSTANSIKANGIIIYAVSINEWSELHLIQDFHKKPQSNSCVVVRSSNNSRCNIRDHLKQINGPKKLVNLDDAPPANTGNEIENLKKKKKESENEEYEEVEKEERI 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01830 753 CDD B_lectin 50 165 IPR001480 -
Vimu6g01830 753 Pfam Protein tyrosine and serine/threonine kinase 467 543 IPR001245 GO:0004672|GO:0006468
Vimu6g01830 753 MobiDBLite consensus disorder prediction 713 753 - -
Vimu6g01830 753 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 430 540 - -
Vimu6g01830 753 PIRSF SRK 283 545 IPR024171 GO:0004674
Vimu6g01830 753 PIRSF SRK 545 641 IPR024171 GO:0004674
Vimu6g01830 753 PIRSF SRK 7 270 IPR024171 GO:0004674
Vimu6g01830 753 SMART blect_4 41 165 IPR001480 -
Vimu6g01830 753 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 15 632 - -
Vimu6g01830 753 SUPERFAMILY Protein kinase-like (PK-like) 449 638 IPR011009 -
Vimu6g01830 753 Coils Coil 727 750 - -
Vimu6g01830 753 MobiDBLite consensus disorder prediction 729 753 - -
Vimu6g01830 753 ProSiteProfiles Bulb-type lectin domain profile. 35 158 IPR001480 -
Vimu6g01830 753 SUPERFAMILY alpha-D-mannose-specific plant lectins 83 228 IPR036426 -
Vimu6g01830 753 ProSiteProfiles PAN/Apple domain profile. 301 384 IPR003609 -
Vimu6g01830 753 Gene3D Transferase(Phosphotransferase) domain 1 544 643 - -
Vimu6g01830 753 Gene3D Phosphorylase Kinase; domain 1 428 540 - -
Vimu6g01830 753 Pfam D-mannose binding lectin 86 191 IPR001480 -
Vimu6g01830 753 Gene3D - 31 162 IPR036426 -
Vimu6g01830 753 ProSiteProfiles Protein kinase domain profile. 465 753 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g01830 753 Pfam PAN-like domain 328 363 IPR003609 -
Vimu6g01830 753 SMART ntp_6 309 385 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01830 Vimu-Chr6 16543011 16556332 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01830 537 640 Receptor kinase-like Gene Family AT4G23190 45.455 5.59e-19 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu6g01830 B_lectin 2.9e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01830 - - vum:124824926 1039.25