Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01827 ATGGTAGAAGTTGAAGTTCTTTCAAAAGTATATGGCACGGAGACAGCAACAACTGCTTCTGAATCGGATTTTCACTATGAAGGCACACTTGCTGATACCGGTGAAGTTTTTGACACAACACACGAAGATAACACTATCTTCTCTTTTGAGCTTGGGAAGGGCAGTGTTATCAAGGCTTGGGAGGTTGCAGTCAAAACCATGAAGGTCGGAGAAGTTGCAAAAATAATTTGCAAGCCAGAATATGCATATGGCAGTGCAGGATCTCCTCCAGATATTCCTCCAGAAGCAACACTTGTTTTTGAAGTTGAGTTAGTTGCCTGTCGGCCAAGGAAGGGTTCCAGTTTGGGAAGTGTTTCAGAGGAGAGGGCAAGGCTTGAAGAACTGAAGAAGCAGAGAGAGCTGGCTGCTGCTGTCAAAGAGGAAGAGAAGAAGAAGAGGGAAGAAGCAAAAGCAGCTGCTGCTGCACGTCTGCAAGCAAAGTTAGAAGCCAAAAAAGGTCAAGGAAAGGGTAAAGATAACACAAATATGATGTTTGGTAAGATACTACATAATCAGCAGCTAGCAACAACATTTTCCCGGGCTACAGCCACAGTTACTTTCAACGAAGGGTCGTTGAAGGTAGAGACGTAG 630 0.4444 MVEVEVLSKVYGTETATTASESDFHYEGTLADTGEVFDTTHEDNTIFSFELGKGSVIKAWEVAVKTMKVGEVAKIICKPEYAYGSAGSPPDIPPEATLVFEVELVACRPRKGSSLGSVSEERARLEELKKQRELAAAVKEEEKKKREEAKAAAAARLQAKLEAKKGQGKGKDNTNMMFGKILHNQQLATTFSRATATVTFNEGSLKVET 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01827 209 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 19 108 IPR001179 GO:0003755
Vimu6g01827 209 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 2 168 - -
Vimu6g01827 209 Gene3D - 1 107 IPR046357 GO:0003755
Vimu6g01827 209 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 13 105 IPR001179 GO:0003755
Vimu6g01827 209 Coils Coil 118 164 - -
Vimu6g01827 209 FunFam Peptidyl-prolyl cis-trans isomerase 1 109 - -
Vimu6g01827 209 SUPERFAMILY FKBP-like 5 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01827 Vimu-Chr6 16480179 16482347 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01827 28 160 Calmodulin-binding Proteins AT5G48570 33.735 1.65e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01827 K01802 - gmx:100500018 245.743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01827 6 16480179 16482347 Vimu6g01827 6 16480179 16482347 ECH