Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01826 ATGGGTTTCCAGGATTTATACCAGAGAGGCGAGCATTGTCCTTCTGTTATTCATGATATTGAACTCTCACCAGATGTCCCCAAATTTTCTGGTAAGCTATGGCTGGTGCTCGGTGTTTTCTTGATGGCAACAATGTTGAGGATGTATGCAACATGTCAACAGCTTCAAGCACAGGCCCAAGCTCATGCCGCAGCAGCCAGTGGCATTCTTGGCCACACGGAACTGAGGTTGCATATGCCACCATCAATAGCACTTGCAAGTCGAGGGCGTCTGCAGGGTCTCAGACTTCAGCTTGCTCTTCTTGACCGGGAGTTTGATGATCTTGATTATGAAACTTTAAGAGCTTTAGATTCAGATAATGTTTCTACGGCAGCTTCCATGACCGAGGAAGAGATAAATGCTCTTCCGGTCCACAAATATAAGGTTGCTGGTCCCCAGAGTGGTGGTTCATCAATGCAACAAGCATCATCATCCACTTCTGCTGAGAAGAAGCAAGATAATTCAGGGGCTGTTGGGAGCATGAAAGCCTCTGACGATGAACTCACTTGCAGTGTATGCTTGGAGCAAGTTAATGTTGGTGAAGTACTGCGTAGCTTACCATGCTTGCATCAGTTTCACGCTAGTTGCATCGATCCTTGGCTGCGTCAACAAGGGACATGCCCTGTATGTAAATTTCGAGCTGGATCTGGGTGGAGTGACAATGGACATAATGATATCGCGGACATGGTCTTGACCAGTATTGGTGTAATTACCCTGACGTGTAGCTACCATTTCCCTTCCCTTTTTGTGTGGCAGTGCTTATTTATCAATTCAACCGCGTTTAATGGATCATTTGTTCAACTGGTGAGTTTCAAGAAGGAAGAAACAAGATAG 873 0.4582 MGFQDLYQRGEHCPSVIHDIELSPDVPKFSGKLWLVLGVFLMATMLRMYATCQQLQAQAQAHAAAASGILGHTELRLHMPPSIALASRGRLQGLRLQLALLDREFDDLDYETLRALDSDNVSTAASMTEEEINALPVHKYKVAGPQSGGSSMQQASSSTSAEKKQDNSGAVGSMKASDDELTCSVCLEQVNVGEVLRSLPCLHQFHASCIDPWLRQQGTCPVCKFRAGSGWSDNGHNDIADMVLTSIGVITLTCSYHFPSLFVWQCLFINSTAFNGSFVQLVSFKKEETR 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01826 290 ProSiteProfiles Zinc finger RING-type profile. 183 224 IPR001841 -
Vimu6g01826 290 SMART ring_2 183 223 IPR001841 -
Vimu6g01826 290 CDD RING-H2_PA-TM-RING 182 224 - -
Vimu6g01826 290 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 156 229 IPR013083 -
Vimu6g01826 290 MobiDBLite consensus disorder prediction 146 172 - -
Vimu6g01826 290 Pfam Ring finger domain 182 224 IPR001841 -
Vimu6g01826 290 PANTHER TARGET OF ERK KINASE MPK-1 23 229 - -
Vimu6g01826 290 SUPERFAMILY RING/U-box 178 227 - -
Vimu6g01826 290 MobiDBLite consensus disorder prediction 143 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01826 Vimu-Chr6 16475077 16478029 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01826 33 243 C3H Transcription Factor Family AT3G55530 77.465 6.16e-106 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01826 K16283 - gmx:100777936 358.221
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01826 6 16475077 16478029 Vimu6g01826 6 16475077 16478029 ECH