Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01825 ATGGCCTCCAAAATCATCCTCCTCCATCTTCCTCCTCTTATAATTACCATTTTTACTGTTTTTCTCAAAATCCAAACAACAACTTCTTCACCCCAAGCCCCTCTCATATTGCCTCTAATATCCCAGACACTTCCACATGGCTTTGTTTCTGTTCCAACTCCTTCTTCACGTAAGCTCTCATTCCACCACAACGTCACCTTAACCGTTTCACTCACCGTAGGGACGCCCCCACAGACCGTTACCATGGTCCTCGACACAGGGAGCGAACTCTCCTGGCTCCACTGCAAGAAAAACCAAAACATTAACTCAATCTTCAACCGACAACTCTCTTCCTCCTACACACCTACACCCTGCACCTCAAACGTTTGCACCACCCGGACCCGAGATTTCCCCATACCCGTTTCCTGCGACCCGAGAAAGCTCTGCCACGCCACCATCTCCTACGCTGACGCCACCTCCATAGAGGGGAACCTCGCCACCGACACGTTCTCCTTCTCCGGTTCGGGTCAACCGGGTATTATTTTCGGGTGTATGGACTCCGGGTTCAGCTCCAACACCAATGAAGATTCTAAGACAACGGGGTTGATGGGTTTGAACCGCGGTTCGCTCTCGTTTGTGACCCAAATGGGGTTTCCGAAATTCTCGTACTGCATCTCCGGCCAGGATGCCTCCGGCGTGTTACTCTTCGGCGATGCAAAACTCACGTGGCTGGGTCCTTTGAAGTACACGCCGCTGGTGAAGATGAATACCCCATTACCCTACTTCGACCGGGTCGCGTACACGGTTCGTTTGATGGGTATTCGGGTCGGTTCAAAACCATTGCAGGTGCCCAAGTCAATTTTCGCGCCGGACCACACCGGGGCGGGACAGACAATGGTGGATTCGGGTATCCAGTTCACTTTCCTTCTCGGGTCGGTTTACACTGCTCTAAAGAACGAGTTTTTGGAACAGACGAAAGGGGTGCTGACCCTTTTGGAGGATCCAAATTTTGTGTTCGAAGGGGCGATGGATTTGTGTTTTCGGGTTAGAGGGGGTGTTGTGCCGGCGGTGCCCGCCGTGACGATAGTGTTCGAGGGGGCGGAGATGGGTGTGTCAGGGGAGAGGCTATTGTATCGAGTGGGTGATGAGGTGGCAAAGGGAAAAGATGTGTATTGTTTCACGTTTGGGAATTCAGATTTGTTGGGAATTGAGGCTTATGTGATTGGGCACCATCATCAGCAGAACGTGTGGATGGAGTTTGACTTGGTCAACTCAAGAGTTGGATTTGCTGACACAAGGTGTGAACTTGCTAGTCGAAGACTTGGCATGGGTCCTTAG 1317 0.5156 MASKIILLHLPPLIITIFTVFLKIQTTTSSPQAPLILPLISQTLPHGFVSVPTPSSRKLSFHHNVTLTVSLTVGTPPQTVTMVLDTGSELSWLHCKKNQNINSIFNRQLSSSYTPTPCTSNVCTTRTRDFPIPVSCDPRKLCHATISYADATSIEGNLATDTFSFSGSGQPGIIFGCMDSGFSSNTNEDSKTTGLMGLNRGSLSFVTQMGFPKFSYCISGQDASGVLLFGDAKLTWLGPLKYTPLVKMNTPLPYFDRVAYTVRLMGIRVGSKPLQVPKSIFAPDHTGAGQTMVDSGIQFTFLLGSVYTALKNEFLEQTKGVLTLLEDPNFVFEGAMDLCFRVRGGVVPAVPAVTIVFEGAEMGVSGERLLYRVGDEVAKGKDVYCFTFGNSDLLGIEAYVIGHHHQQNVWMEFDLVNSRVGFADTRCELASRRLGMGP 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01825 438 ProSiteProfiles Peptidase family A1 domain profile. 67 423 IPR033121 -
Vimu6g01825 438 FunFam Aspartic proteinase PCS1 58 231 - -
Vimu6g01825 438 CDD pepsin_A_like_plant 66 427 IPR034161 -
Vimu6g01825 438 Pfam Xylanase inhibitor C-terminal 259 423 IPR032799 -
Vimu6g01825 438 Gene3D Acid Proteases 237 431 IPR021109 -
Vimu6g01825 438 FunFam Aspartic proteinase PCS1 235 431 - -
Vimu6g01825 438 PANTHER ASPARTYL PROTEASE-RELATED 25 427 IPR001461 GO:0004190|GO:0006508
Vimu6g01825 438 Pfam Xylanase inhibitor N-terminal 69 231 IPR032861 -
Vimu6g01825 438 SUPERFAMILY Acid proteases 67 427 IPR021109 -
Vimu6g01825 438 Gene3D Acid Proteases 60 230 IPR021109 -
Vimu6g01825 438 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 82 93 IPR001969 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01825 Vimu-Chr6 16468482 16470875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01825 16 428 Miscellaneous Gene Families AT1G44130 24.541 1.75e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01825 - - gmx:100783835 725.317
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01825 6 16468482 16470875 Vimu6g01825 6 16468482 16470875 ECH
Vimu6g01825 6 16468482 16470875 Vimu6g04236 6 44451012 44454913 ECH