Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01824 ATGATGTCTTCTGGGACATCCTCGTACTGGTGCTACCGGTGCAGCCGATTCGTCCGCGTTTTTCGCCAGGATGCTGTGGTCTGTCCCGACTGTGACGGCGGATTCATCGAAGAAATCGAACACCCGCCGCGCTCAGTCCATCTCGACCCTCGCCGTCGTCGCTTCCCTGCCGCAGCCATGTACATGATCGGCCAGCGCCCTGCCTCCGACAACGCTGCCCGTCCCTTCCTGCGCCGCACCCGCCGCAACGGTGGTGACCGCTCCCCCTTCAACCCCGTTATCGTCCTCCGCGGCAGCGCAGCTGCCACCTCCGTTACCAGCGAGGAGGAAAGTCGAGGTTTTGAGCTCTTCTACGACGATGGTGCCGGTTCTGGCCTGAGACCCTTGCCTCCGAGCATGTCAGAGTTTCTACTCGGATCTGGATTCGATAGGCTTCTGGAGCAACTGTCTCAGATTGAGATCAACGGTATTGGAAGGTATGAGCACCCTCCTGCGTCAAAAGCAGCCATAGATTCCTTACCAACCATCGAAATTGATAACACTCACTTAACCATGGAATCACACTGTGCGGTGTGCAAAGAAGCTTTTGAATTAGGTACCGCGGTGAGGGAAATGCCGTGCAAGCATATATATCACCCTGAATGCATCTTACCATGGCTAGCTCTCCACAATTCTTGTCCTGTTTGCCGCCACGAGTTACCTGCGGATTCCTCAAACGCAAATTCAAATGCAAATTCAAATCCACCACAAAATGTTGGCTTGAACGAGGAAGAGAATGTGGGGTTGACGATTTGGAGGTTGCCCGGTGGAGGGTTTGCTGTAGGGAGATTTTCCGGTGGGAGAAGAGGTGCTGAGAGGGAGCTTCCTGTGGTGTATACTGAAATGGATGGAGGTTTTAACAATGGTGGTGAGCCTAGGAGGATTTCATGGTCTTCTAGAGGGAACAGAGGGAGAGAGAGTGGGGGATTGAACAGGTTTTTCCGCAATTTGTTTGGTTGCTTCAGAGGTGGGGTTGGAAGTAGTGGTTCTAGTACTACACAGCGTTCTGCTTCAAGTAGAGAGTCTATGAGAGCGAGTTCATCTCGTTCTAGTATGGATCCATCTCCGCGATCGCGTAGGACTTGGTCTATGGATGTAAACAGTGGGATGAGAGCATGGTAG 1161 0.5289 MMSSGTSSYWCYRCSRFVRVFRQDAVVCPDCDGGFIEEIEHPPRSVHLDPRRRRFPAAAMYMIGQRPASDNAARPFLRRTRRNGGDRSPFNPVIVLRGSAAATSVTSEEESRGFELFYDDGAGSGLRPLPPSMSEFLLGSGFDRLLEQLSQIEINGIGRYEHPPASKAAIDSLPTIEIDNTHLTMESHCAVCKEAFELGTAVREMPCKHIYHPECILPWLALHNSCPVCRHELPADSSNANSNANSNPPQNVGLNEEENVGLTIWRLPGGGFAVGRFSGGRRGAERELPVVYTEMDGGFNNGGEPRRISWSSRGNRGRESGGLNRFFRNLFGCFRGGVGSSGSSTTQRSASSRESMRASSSRSSMDPSPRSRRTWSMDVNSGMRAW 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01824 386 SMART ring_2 189 229 IPR001841 -
Vimu6g01824 386 MobiDBLite consensus disorder prediction 338 378 - -
Vimu6g01824 386 Pfam Protein of unknown function (DUF1117) 260 365 IPR010543 -
Vimu6g01824 386 ProSiteProfiles Zinc finger RING-type profile. 189 230 IPR001841 -
Vimu6g01824 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 236 IPR013083 -
Vimu6g01824 386 FunFam E3 ubiquitin-protein ligase RING1-like 151 236 - -
Vimu6g01824 386 CDD RING-H2_RNF126-like 189 230 - -
Vimu6g01824 386 Pfam zinc-ribbon 8 39 IPR039525 GO:0061630
Vimu6g01824 386 SUPERFAMILY RING/U-box 169 238 - -
Vimu6g01824 386 MobiDBLite consensus disorder prediction 302 321 - -
Vimu6g01824 386 Pfam Ring finger domain 188 230 IPR001841 -
Vimu6g01824 386 MobiDBLite consensus disorder prediction 338 386 - -
Vimu6g01824 386 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 98 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01824 Vimu-Chr6 16457490 16461209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01824 128 239 C3H Transcription Factor Family AT5G01980 41.071 4.38e-24 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01824 K11982 - gmx:100807324 630.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01824 6 16457490 16461209 Vimu1g00640 1 4095140 4097572 ECH
Vimu6g01824 6 16457490 16461209 Vimu6g01824 6 16457490 16461209 ECH