Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01819 ATGTGTGTACAGTTTTTTTGGTTGCTCTGCCTCGTGATGGCCAAAACCAGAACATTTCTGCTTGTGCTTCCTCTCTGTGTTTTGACCCTTCTTCTGGTCACAAACACTGCAAAGTGTCAAGAGTTTCTCTTCAACGGATTTGAAGGTGCTTCTGCCACCAACATCGCCTTAAACGGAGGAGCAGTGATTGAGCACAAGGGCTTGCTTCGTTTAACAAACAACACTCAGAGAGTAATTGGGCACGCGTTTTATCCAACCCCAATTCAGTTCAAGCACAACAACAAAAGCTCTTCCACCGACCCAAAACTTTTGTCCTTTTCCACTGCTTTTGCGTTTGCAATCATCCCTCAGTACCCAAAACTCGGTGGCCACGGTTTTGCCTTCACCATTTCGCGCTCCAGGTCGCTGTCGGACGCATACCCGAGTCAGTATTTGGGCCTCCTCAACCCAAAAGAATTGGGGAATTTCTCAAACCACCTTTTTGCAGTGGAGTTCGATACCGTCCAAGACTTCGAGTTCGAGGACATCAATGACAACCATGTTGGTGTCAACCTCAACAACATGGTATCCAACAAATCCGTTGAAGCTGCGTTTTTCCCTGAGGATTCAACCAATAAGCAAAACCTGAGTTTGAAGAGTGGTAAAGTGACACAAGCATGGGTTGATTATGATTCATCAACGAACCAATTGGAGGTTAGACTCTCCCCAACTTCCTCCAAACCCACTTCCCCAATTTTAAAATACAAAGTAGATCTGTCACCAATTCTCCAAGATTCCATGTACGTGGGGTTCTCTTCTTCGACAGGGTTACTCGCAAGCACACACTATATTTTGGGTTGGAGCTTCAAAATAAACGGAGAGGCCAAAACCCTTTCACTGCACAAGCTCCCATCTCTCTCTGCCTCCAACAAAACTCAAAAGCGCTTAAAATTAGGACTCTCCCTTTTATTGATTCTAACACTCGCCACAATTTCTCTGGCGTGTTACCTATTCAGATGTATGAAGAACGCCGAAGTAATCGAAGCTTGGGAGAGGGACGTTGTTGGGCCACACAGATTCCCATACAAAGAGCTACACAAAGCCACGAAGGGTTTCAAAGACAAGAACCTCCTCGGGTTCGGAGGGTCCGGTCGCGTCTACAAAGGGGTTCTCCCGAAGTCCCACATGGAAATTGCCGTGAAGCGAATCTCGCACGAATCGAAACAACGTATGCAGGAGTTTGTGTCAGAAGTATCAACCATAGGAAGACTCCGACACAGAAATCTCGTACAGCTACTGGGTTGGTGTCGGAAACAAAACGACCTTTTACTTGTGTACGATTTCATGAGAAATGGAAGCTTGGACAGATACTTGTTCGATCAAGCGAGGAAAATACTAACGTGGGAGGAAAGGTTTAAGATAATAAAGGGAGTGGGTTTGGGATTGGTGTATTTGCATGAGGAGTGGGAACAAACGGTGATTCACAGAGACGTCAAAGCGGGGAACGTTTTGTTGGATAGTGACATGAATGGGAGGTTGGGGGATTTTGGGTTGGCCAAGCTTTACGAGCATGGTGCCAACCCTAGCACCACACGTGTGGTGGGAACGATGGGATACCTTGCACCTGAACTCACACGAACGGGGAAACCCACCACCAGTTCTGATGTTTACGCTTTCGGAGCGTTGTTGTTGGAGGTGGTGTGCGGAAGGAGGCCCATTGAGGTGAAGGCATTGCCGGAGGAGCTGGTGCTGGTGGACTGGGTCTGGGACCGGTGGCGCATGGGGGCGCCGCTGGCGGTGGTGGACCCCAGGTTGGGTGGCGCGTTTGATGAGGTGGAAGTTTTGGTGGTGATTAAAGTGGGGTTGTTGTGTTCCGCGGAGGCACCAGAGAAGAGGCCCAGCATGAGGCAGGTGGTGAGGTATTTGGAGAGGGAGGTGGCGCCGCCTCCGCCGGTGGTTTACGGGAAAAAAGATGGTGGTGATGGCTACTACGAGGAGTTACATTCGTATTCGCCGTGGTCGTCGGTGGGTGATGACGTGGCGTCGTCTCTTTCACTTTCCGGTGGCCGGTAA 2052 0.4937 MCVQFFWLLCLVMAKTRTFLLVLPLCVLTLLLVTNTAKCQEFLFNGFEGASATNIALNGGAVIEHKGLLRLTNNTQRVIGHAFYPTPIQFKHNNKSSSTDPKLLSFSTAFAFAIIPQYPKLGGHGFAFTISRSRSLSDAYPSQYLGLLNPKELGNFSNHLFAVEFDTVQDFEFEDINDNHVGVNLNNMVSNKSVEAAFFPEDSTNKQNLSLKSGKVTQAWVDYDSSTNQLEVRLSPTSSKPTSPILKYKVDLSPILQDSMYVGFSSSTGLLASTHYILGWSFKINGEAKTLSLHKLPSLSASNKTQKRLKLGLSLLLILTLATISLACYLFRCMKNAEVIEAWERDVVGPHRFPYKELHKATKGFKDKNLLGFGGSGRVYKGVLPKSHMEIAVKRISHESKQRMQEFVSEVSTIGRLRHRNLVQLLGWCRKQNDLLLVYDFMRNGSLDRYLFDQARKILTWEERFKIIKGVGLGLVYLHEEWEQTVIHRDVKAGNVLLDSDMNGRLGDFGLAKLYEHGANPSTTRVVGTMGYLAPELTRTGKPTTSSDVYAFGALLLEVVCGRRPIEVKALPEELVLVDWVWDRWRMGAPLAVVDPRLGGAFDEVEVLVVIKVGLLCSAEAPEKRPSMRQVVRYLEREVAPPPPVVYGKKDGGDGYYEELHSYSPWSSVGDDVASSLSLSGGR 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01819 683 SUPERFAMILY Protein kinase-like (PK-like) 348 643 IPR011009 -
Vimu6g01819 683 Gene3D - 39 302 - -
Vimu6g01819 683 Gene3D Phosphorylase Kinase; domain 1 350 441 - -
Vimu6g01819 683 FunFam L-type lectin-domain containing receptor kinase S.4 442 645 - -
Vimu6g01819 683 Gene3D Transferase(Phosphotransferase) domain 1 442 643 - -
Vimu6g01819 683 CDD lectin_legume_LecRK_Arcelin_ConA 41 286 IPR001220 GO:0030246
Vimu6g01819 683 Pfam Legume lectin domain 40 296 IPR001220 GO:0030246
Vimu6g01819 683 PANTHER - 34 642 - -
Vimu6g01819 683 SMART serkin_6 365 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g01819 683 FunFam L-type lectin-domain containing receptor kinase S.4 38 290 - -
Vimu6g01819 683 ProSitePatterns Protein kinases ATP-binding region signature. 371 394 IPR017441 GO:0005524
Vimu6g01819 683 ProSiteProfiles Protein kinase domain profile. 365 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g01819 683 SUPERFAMILY Concanavalin A-like lectins/glucanases 39 299 IPR013320 -
Vimu6g01819 683 ProSitePatterns Serine/Threonine protein kinases active-site signature. 486 498 IPR008271 GO:0004672|GO:0006468
Vimu6g01819 683 FunFam L-type lectin-domain containing receptor kinase S.1 350 441 - -
Vimu6g01819 683 Pfam Protein kinase domain 365 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g01819 683 CDD STKc_IRAK 371 637 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01819 Vimu-Chr6 16430994 16433754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01819 39 646 Receptor kinase-like Gene Family AT3G55550 61.951 0.0 741
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vimu6g01819 Lectin_legB 2.3e-77 CL0004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01819 - - gmx:100787552 1050.43