Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01814 ATGGCGAATCGGTGGTGGGCTGGGAATGTGGGAATGATTAGAGAGCAAGAGTTGATGGAGAACAATAACAACGCCAATACTACTCCCACCAATAGCAGCAACAGCAACACAAACGCCAACACCAACACCACGGAGGAAGAGGTCAGCAGGGACAACGGAGACGACCAGAACCAGAACCTCGTAAGCCATGAAGGTTCCGAGCCCGGAAGCGGTGGTCGGAGGCCACGTGGCAGGCCTCCCGGCTCCAAGAACAAGCCCAAGCCGCCGATTGTCATAACCAAAGAAAGCCCCAACGCGCTCCGAAGCCACGTGCTGGAAATCGCCAGCGGCAGTGACGTAGCAGAGAGCATCGCCGCCTTCGCCAACCGCCGCCACCGCGGCGTGTCGGTCCTCAGCGGCAGCGGCATTGTCACCAACGTCACCCTCCGCCAACCCGCCGCGCCCGCAGGAGTCATCACCCTCCACGGAAGGTTCGAGATTCTCTCCCTCTCCGGCGCCTTTTTGCCCTCTCCTTCGCCTCCTGGCGCCACCGGACTCTCCGTCTATTTG 549 0.6066 MANRWWAGNVGMIREQELMENNNNANTTPTNSSNSNTNANTNTTEEEVSRDNGDDQNQNLVSHEGSEPGSGGRRPRGRPPGSKNKPKPPIVITKESPNALRSHVLEIASGSDVAESIAAFANRRHRGVSVLSGSGIVTNVTLRQPAAPAGVITLHGRFEILSLSGAFLPSPSPPGATGLSVYL 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01814 183 MobiDBLite consensus disorder prediction 22 46 - -
Vimu6g01814 183 MobiDBLite consensus disorder prediction 22 94 - -
Vimu6g01814 183 CDD DUF296 101 183 IPR005175 -
Vimu6g01814 183 SUPERFAMILY AF0104/ALDC/Ptd012-like 97 182 - -
Vimu6g01814 183 Pfam Plants and Prokaryotes Conserved (PCC) domain 101 169 IPR005175 -
Vimu6g01814 183 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 34 183 IPR014476 GO:0003680
Vimu6g01814 183 Gene3D - 100 183 - -
Vimu6g01814 183 ProSiteProfiles PPC domain profile profile. 97 183 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01814 Vimu-Chr6 16403723 16404836 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01814 73 183 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 76.577 2.20e-56 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01814 - - gmx:102667174 268.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01814 6 16403723 16404836 Vimu6g01814 6 16403723 16404836 ECH
Vimu6g01814 6 16403723 16404836 Vimu1g01028 1 7498352 7499194 PCT