Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01810 ATGGAGGAGTCTCAGTACTTGTTGTGGTTCAAGAGGAAACAAATCTTGAACTCACATATTCAACAACCATTTGGAGCCCGCATCAACAACACCAACTCATCATGGGAGGAAAGAGCTTTTGCAGAAGATGCTGCTAGGATACTTGGTGGGTGCATATGGCCTCCAAGATCTTACTCGTGTAATTTCTGTAAAAGAGAGTTTAGGTCTGCTCAGGCTCTAGGGGGACACATGAATGTTCACAGAAGGGACAGGGCTAGGCTCAAACAAAGCCTTGGTCACCCTAATGAATCCCTTCAACATCTTCACAAAAATGATTGTAAGTCACCAACTGCTCAATTTTCTCAAGAGATGGAGCTTCTCTCGTCTAGATAA 372 0.4382 MEESQYLLWFKRKQILNSHIQQPFGARINNTNSSWEERAFAEDAARILGGCIWPPRSYSCNFCKREFRSAQALGGHMNVHRRDRARLKQSLGHPNESLQHLHKNDCKSPTAQFSQEMELLSSR 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01810 123 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Vimu6g01810 123 SUPERFAMILY beta-beta-alpha zinc fingers 55 85 IPR036236 -
Vimu6g01810 123 Gene3D Classic Zinc Finger 55 121 - -
Vimu6g01810 123 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 85 IPR013087 -
Vimu6g01810 123 Pfam C2H2-type zinc finger 58 82 - -
Vimu6g01810 123 PANTHER OS07G0101800 PROTEIN 29 111 - -
Vimu6g01810 123 SMART c2h2final6 58 80 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01810 Vimu-Chr6 16382821 16383192 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01810 20 90 C2H2 Transcription Factor Family AT2G37740 64.865 4.02e-28 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu6g01810 zf-C2H2_6 6.7e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01810 - - gmx:102663477 204.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01810 6 16382821 16383192 Vimu1g01024 1 7465472 7466131 PCT