Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01803 ATGGTAATACAACTTCTTTCGCCTCCTCTTTATAGATCTAAGGGTAAGGGAACAGGGAGTTTCGGCAAGAGGAGGAACAAGACCCACACGCTCTGTGTGAGGTGTGGCCGTCGCAGCTTCCACCTTCAAAAGAGTCGGTGTGCTGCGTGCGCCTTCCCTGCTGCGCGCACCAGAAAGTATAATTGGAGCGTTAAGGCCATTAGGAGAAAGACTACCGGAAGTGGAAGGATGAGGTACCTGCGTCACGTGCCTCGCAGATTCAAGAGCGGCTTTAGAGAGGGCAACACCAAGGAAGAGGGGGGCGGCTTCCACTACCTGAGCTTTGAAAGGAAACAATTTTTCTGGGTTAGTGAATTATAA 360 0.5111 MVIQLLSPPLYRSKGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARTRKYNWSVKAIRRKTTGSGRMRYLRHVPRRFKSGFREGNTKEEGGGFHYLSFERKQFFWVSEL 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01803 119 SUPERFAMILY Zn-binding ribosomal proteins 15 68 IPR011332 GO:0006412
Vimu6g01803 119 ProSitePatterns Ribosomal protein L37e signature. 17 36 IPR018267 GO:0003735|GO:0005840|GO:0006412
Vimu6g01803 119 PANTHER 60S RIBOSOMAL PROTEIN L37 15 99 - -
Vimu6g01803 119 Pfam Ribosomal protein L37e 16 66 IPR001569 GO:0003735|GO:0005840|GO:0006412
Vimu6g01803 119 FunFam Ribosomal protein L37 14 100 - -
Vimu6g01803 119 Hamap 50S ribosomal protein L37e [rpl37e]. 15 66 IPR001569 GO:0003735|GO:0005840|GO:0006412
Vimu6g01803 119 Gene3D - 15 100 IPR011331 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01803 Vimu-Chr6 16318421 16318994 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01803 16 94 Cytoplasmic Ribosomal Protein Gene Family AT1G52300 88.608 1.85e-48 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01803 K02922 - csv:101221537 169.088