Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01802 ATGGCTGGAATTTGCTGTAGAGTTGTTGGAGAAGGTGACACCCCTACCCCTCTTGAACCAACTTCTCGTCCTTCCACCCTCAGAGCTATGGATATCGTACCCTTGAAGTACATAGCTGACATGGCTGTGCCCGACTCTTCCCGAAAGCGCCCCAAGCTCGATCTCAATGACACTGATGATCAACTTCAAACTGACCGGGAATCCTCCGGAACCAAGGTTATGAAGAAGGATTCCCAATTCCTCAACAACGAACAAGATGATGATGATGATTCAGACGCCAAATCCCTGACAGACGAGGATGACGACTCTGAAGATGAAGAGTGTCCCAAGTATGGCGTCACCTCTGTCTGCGGCAGGAGGAGAGACATGGAGGACTCCGTTTCCCTACGCCCTTTCTTCTCGCTTGAAGGCTTCCACTACTTTGCCGTTTTTGACGGTCACGGTTGCTCTCATGTTTGTATTCTCCCTCTGTTCAACTCAGTGCTTGTTAATGGATCTGTTCTGTATTCTCCATTTAATCATTTCAATTTTTTCTTTTCACAGGTTGCCACTATGTGCAAGGAGAGGCTCCACGAGATTGTGAACGAAGAGATTCTGGATGGAGAGGACAGTATACAGTGGGGAACAGTGATGCATAACGGATTTGCTCGCATGGATGAAGAGGTTTTCCGCCAGAGCCAGGGCAACCAGACTTTCAACTGTCGATGCGAGCTCCAGACTCCGCACTGCGACGCAGTTGGATCCACTGCTATCATTGCCATCCTCACTCCCGACAAAATTGTCGTCGCCAACTGCGGCGACTCCCGTGCTGTTCTCTGCCGTGCCGGAGTTGTCATTCCCCTCTCTTCGGACCACAAGCCGGACCGTCCCGACGAATTGCTCCGAGTGGAATCCAAGGGAGGGCGTGTGATTTACTGGGACGGTGCAAGAGTGCTGGGCGTGTTGGCCATGTCTCGAGCCATAGGCAATGTTACTTGTGTTTGTTCAGGAGACTACTACCTGAAGCCGTTCGTGATTTCGGAGCCCGAGGTGACTGTGATGGAGCGAAGTGATGCAGACGAGTGTTTGATACTGGCAAGTGATGGACTGTGGGATGTGGTGTCAAATGAAACTGCTTGTGGGGTGGTGAAGATGTGCCTGAAGTCGCAGAAGCCCCCGACTCCTCCGGGCTCTCCGGGTCATGGTTATGTGACGGCAGATGGCTCCGACCGTGGTTGCTCGGATGCCTCGATTCTGTTGACCAAGTTGGCTTTGGCAAGGCACAGTGCAGATAATGTGAGTGTGGTGGTGCTTGATCTGAGGAAGGATCAAGAACAATCATCCACTCCCACTTCCAGCTAA 1341 0.5168 MAGICCRVVGEGDTPTPLEPTSRPSTLRAMDIVPLKYIADMAVPDSSRKRPKLDLNDTDDQLQTDRESSGTKVMKKDSQFLNNEQDDDDDSDAKSLTDEDDDSEDEECPKYGVTSVCGRRRDMEDSVSLRPFFSLEGFHYFAVFDGHGCSHVCILPLFNSVLVNGSVLYSPFNHFNFFFSQVATMCKERLHEIVNEEILDGEDSIQWGTVMHNGFARMDEEVFRQSQGNQTFNCRCELQTPHCDAVGSTAIIAILTPDKIVVANCGDSRAVLCRAGVVIPLSSDHKPDRPDELLRVESKGGRVIYWDGARVLGVLAMSRAIGNVTCVCSGDYYLKPFVISEPEVTVMERSDADECLILASDGLWDVVSNETACGVVKMCLKSQKPPTPPGSPGHGYVTADGSDRGCSDASILLTKLALARHSADNVSVVVLDLRKDQEQSSTPTSS 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01802 446 SMART PP2C_4 98 431 IPR001932 -
Vimu6g01802 446 FunFam Protein phosphatase 2C 50 108 441 - -
Vimu6g01802 446 Gene3D - 103 442 IPR036457 -
Vimu6g01802 446 CDD PP2Cc 110 433 IPR001932 -
Vimu6g01802 446 MobiDBLite consensus disorder prediction 43 73 - -
Vimu6g01802 446 ProSiteProfiles PPM-type phosphatase domain profile. 110 433 IPR001932 -
Vimu6g01802 446 MobiDBLite consensus disorder prediction 83 107 - -
Vimu6g01802 446 Pfam Protein phosphatase 2C 179 393 IPR001932 -
Vimu6g01802 446 SUPERFAMILY PP2C-like 110 434 IPR036457 -
Vimu6g01802 446 ProSitePatterns PPM-type phosphatase domain signature. 140 148 IPR000222 GO:0043169
Vimu6g01802 446 PANTHER PROTEIN PHOSPHATASE 88 433 IPR015655 GO:0004722|GO:0006470
Vimu6g01802 446 MobiDBLite consensus disorder prediction 41 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01802 Vimu-Chr6 16305207 16306752 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01802 109 439 PP2C-type Phosphatase Gene Family AT1G07430 51.667 6.98e-122 360
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01802 6 16305207 16306752 Vimu1g01009 1 7293611 7295230 ECH
Vimu6g01802 6 16305207 16306752 Vimu6g01802 6 16305207 16306752 ECH
Vimu6g01802 6 16305207 16306752 Vimu1g01009 1 7293611 7295230 PCT